Gene detail

Detailed information of evm.model.HiC_scaffold_14.214 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:3145931...3157713
NR annotation: XP_031556533.1, putative deoxyribonuclease TATDN1 [Actinia tenebrosa]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P8M1	Deoxyribonuclease TATDN1 OS=Mus musculus OX=10090 GN=Tatdn1 PE=1 SV=1
Q148G4	Deoxyribonuclease TATDN1 OS=Bos taurus OX=9913 GN=TATDN1 PE=2 SV=1
Q6P1N9	Deoxyribonuclease TATDN1 OS=Homo sapiens OX=9606 GN=TATDN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003425 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14226 all species →	DIOX_N	non-haem dioxygenase in morphine synthesis N-terminal	Family	Interproscan
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan
PF03171 all species →	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018228 all species →	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR026992 all species →	Domain	Non-haem dioxygenase N-terminal domain	Interproscan
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR044861 all species →	Domain	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR050891 all species →	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR027443 all species →	Homologous_superfamily	Isopenicillin N synthase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060 all species →	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.