Gene detail

Detailed information of evm.model.HiC_scaffold_14.314 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:4170316...4208262
NR annotation: XP_047138087.1, transcription initiation factor TFIID subunit 5 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_14.314

ATGTCTACTGCTTCTGGTACGAAGGAAAACGAGAAACAAGTGCTCAAAGCATTGCTACAATACTTGAAAAAGAATAATTTGAAGGCAACAGAAGAAGCTCTCAAAGCAGAGGCTGGATTTGATGAAAAGGAATTCAGTTCAATCAATGCAGCAGCTGCCTCAAGTGACTCAGTGCCTGATATAACAAGCATTTTACCAGAATATGAGAaTGAGGGAGATCCTCTAAGTTATGAAGAATACTATGAAGAATTGCTGGCATATGTGGACAGATCATTGGATATGTATAAGCCAGAGCTGTCTTTGGTACTTTATCCTCTATTTGTACATCTCTACCTTGAACTAACTTACAAGGGACTCCAAAAAGAAGctgaaaaatttttcaagaaattcgaATCGTACCAAGAAGGATATCGGCAAGACGATATGCGTAAATTGAAATGTGTCACCAAAAGAGAACACATGTACGGAAGCAACGAAATACTCGACTCTTTCAGAAGTTCGAAATATGTGATTCGTTTTTCAAGAGAGACGTTTGCCATGCTAAAGAAGCATCTACAGGAAAACCAGAGAGATGTTATTTTGAACATTATCCAACAGCACTTTCACCTAGACGTATTCGATGGTCGCCCAAGGAAGAAGCGCACCGTCGGAGCAGGATCTGGTGGAATAACCGGAGAGGCACCCCAGTACGCTAATAAGGCCAAAGTTTTCTATGGGTTAATAAATGAACCTGAACTACACGCTGCGGTCGAAGAAGACAGTGATGAagaggaagacaaagaaaaacCCAAGAAAAAGAAGTCGAAGAAAGACGAGGcaaagagACGGCAAGCGGCTGATCCTCATGCGCCTAAAGCAGACAGGATTCCCTTTCCAACATTGAAAGATAGCGACAAAAGACTGAAGCTGGCAAAATACAAGGAAATCTCAAAGCGTCTTCATGTTGGACCAAACAAGATTCCATCAGTGTGTTTCTACACTTTCCTGAATGCCAGTCAGGGCTTAAATACTGTCGAATTCAGCGATGATTCTTCTATGGTTGCGGGTGGCTTCGATGATTCGGCTATTCGAGTTTGGAGTTTAACACCAAGAAAACTACGAACCCTCAAAACAACTTTTGAGCTTTCACGAATCGATAAAGAGGCCGATGATGTTTTCGAGCGAATTATGAACGATAGGTCCGCAACGGAGCAGAAAACCTTGTATGGTCATAGCGGACCAGTTTATGGCCTAAGTTTCAACCAAGATAActcatttcttgtttcttcgtCTGAAGATGGGACAGtTCGACTGTGGAGCCTACACACATTCACAAATCTAGTAGTTTATAAAGGCCATAATTATCCAGTATGGGACGTGAAGTTCTGCCCCAAAGGCTACTATTTCGCTTCAGCTTCTAATGACAAAACCATTCGACTTTGGTGCACAGATAACCCATTGCCTCTGCGTATCTTCTGCGGGCATCTCGCAGACGTCAATGCAATAGATTTCCATTGTAATTGCAACTACATCGCAAGCGGATCAGCTGATCGTACGGTTAGAGTATGGGATCTAGTGACTGGAAATTGCGTCAGAATGTTTACCGGACACAAGGGAGCTGTTCACGTTATCAAGTTTTCGCCTGATGGCAAACATCTTGTTTCTGCAGGTGTGGATAAACGTATTTTGCTTTGGAGCATAGTGGAAGGAGCACCTGTTATCGATCTTATAGGCCATAGTGATGCAATTGTCTCTCTTTGCTTCTCAAGACAAGGTCATGTCCTCGCTTCAGGTGGAATTGATAATTGTTTGAAGTTATGGGATATCAAACGTGCGTGTAGAatggaagatgatgatgatattgatcaaATTGAAACTGGATTTTCAAGGGGACAGCGTCTGTTGAAGGAGTTTGCGAAAGATATTCAAGTTGGGAACgtctttttgaagattttcgaaACCTGCAGCATCTTCCGAAAGGTTTTTGAGCTgaaagcaacttttcaaaaaagtATCGGAACTCGAGGAGGGCTTTTTGAAGAACTTGGAAAGGTTCTTACGCCAGCAGGTTTTAAACAAACTGTTAAGCTGACAGCATCTTTCGAAAGATTTTGGTGGCTTGCAGCAGCTCTCTTTGAAAGATCTGAAAACTTGTTGGAAGCATCTGGTGGAAGGTTTCAAAGCAAAAAAGGTCTAGTGAACGGGGTTAACGGTTTGCGAAAGTTTATTGTAGCTTTCAACCTCCACAATCTCGTGATGGCACAAGAAAGAGGAATCTTTAGCAGTGGCTCTGCAGAAGAACTAGTAGACGAAGCTATTAAGAGATTCGCACCGTGCTCTGAGGAATTCTTAACCGCAAAGCACCTGTTACAGATATACAGTGCTGTTCAACCAACCCATGAAATAACACTAAAGCAAGTCGAAGCCTCTATACTGCAAGTTACTTGTACGGAGATATGTGATCGAGAGGATGTCATTGACGTTCTGCAAGAACTCGATAGAAGGAATTATCTACTAAGAGATCTGAAATGGGAGTTTCATTTCTTTGATAGCGATAAAACTGGCTGCATCCCAGAGGAGAAAGCCTATTTTTTGTTCTGCGCTGTTCACGGGAAAGAATCGAAGAAAGTGTGGAATAAGTTTGTATCACAGCGCACTGTGCCTGGCTCTAAGATATCATTTGATGAGATTTCGACTATTCTTTGTGATATAATTGTAGAGTAG

Transcript

evm.model.HiC_scaffold_14.314

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15542	Transcription initiation factor TFIID subunit 5 OS=Homo sapiens OX=9606 GN=TAF5 PE=1 SV=3
Q8C092	Transcription initiation factor TFIID subunit 5 OS=Mus musculus OX=10090 GN=Taf5 PE=1 SV=1
P49846	Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster OX=7227 GN=Taf5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001573 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04494 all species →	TFIID_NTD2	WD40 associated region in TFIID subunit, NTD2 domain	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007582 all species →	Domain	TFIID subunit TAF5, NTD2 domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR037264 all species →	Homologous_superfamily	TFIID subunit TAF5, NTD2 domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_14.314.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.