Gene detail

Detailed information of evm.model.HiC_scaffold_14.40 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:676829...712588
NR annotation: SMN17385.1, hypothetical protein CRYPA_1570 [uncultured Candidatus Thioglobus sp.]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_14.40

ATGGGGTTTAGCAAGGTGAACGTAAATGAATATCAATTGAAGGGAAGCTTTGAAATTAAGTCGTCCATTGTTTACAGCTGTGGATTACTAGAAGCTGGGAAAAGTTTAGAACGTGAAATTTCGAAAGTCTACATTAACGAACAGAGAATTaatagctacacgcttttttacgAACCTACATGTGGAAGAGAGCTCAAGAAAGCTCTAGCAAGACGCGTACTGTTTATGTTAGGGGGTACTGTTTATTTTGTATTTGGATTTTCTCTTCGTTTGGTTCAGCTCTCATCCAGATGTTGGACAACCGCTTTGCCACAAATCACCAAAGATATCAATAAGCAGTCTTTAGTGAAGGAATTATTATTTTTACCGACGTCTTTGTTCCTGGCGTATAGTCGCATAAGgttgctgtttgcttcatcgTACCACTCTGAAGAAACAGCTgttagtgttgttgttgttagaagctgtttccgaaagagtggggCTATCCTCATCATAGAGACAGTTGCATTCGGTGTTATACGAATAAAAGGATTCCTAAGTGGATTTTACCTCTGCATGAATAAAAGAGGACACTTAGTAGGAAGGtacaatatttgcaaaaagaaaCTGGAAAGCAAAAGAGAAGGCTTAAAGATTCTGGTAAAGGATTtggacaattgtcagattgagaGAGATATTTACAAGAATAAAGTTTGCCAGTTGCAACAAGAGCTTGACGAATTAAAAGAGGTTATTGGAGGACAATGGAaggataaaagaagaaatggcTCCTTTTTCTCACCAGAAGAAAGTAATGACAAGAAGATAAAAACACTTACACAGCTGATACAGCATGTGAGAGAAGAGAATCAGGCATTACATAATGACCTTGCAACTGTAAAACAGCTCTATTCAGAGGCACAGAGAGATAACCAGTTGCTTAGAGAAACACTACACCAACATGAAAGCAGGAAAAAGAATCAACAAGTGAAAGCAGAGACAAAGCATGGCTTGTTGAACAACTGGAAGAGGCACAGAAAAAGAGAACAAATTATTGTAGATGAGCAGCATGGTTTTCGTTCCAAGAGGTCATGTGAAACACAGTTAATTACAGCTCTAGAAGACATAGCAAGGAAAAGAAACATGGGTAGCAATGTGGATATTTTGATCTTAGATTTCAGTAAGGCTTTTGACACTGTTCCACATGGAAGATTAATGTCAAAGTTAGACCATTATGGAATAAAGAGATCAACTGATATTGGAAGGTGGATCAGTGCTTGGTTATGGGACCGAAAACAGCAAGTAGTTGTTGATGGTGAAACTTCAAGTTCTGTCAAAGTTGAGTCAGCGTACAGCGTTTTTATGACTGTGACGGACACGCTCACTTCAGCAtacagtgtttttatttctgactgtgacacgctcccttcagcgtacagtgttaatatttatgactgcgacacgctcccttcagcgtacgcgtacagtattattatttatcactgcgacacgctcccttcagcatacagtattattatttatcactgcgacacgctcccttcagcgtacggtgttattatttattacagcgacacgctcccttcagcatacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatgactgtgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatgactgtgacacgctcccttcagcgtacagtgttattatttatcacAGCGACaagctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagcattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagatttattatttatcactgcgacacgctcccttcagcgtacggtgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctccctgcagcgtacagtgttattatttatcactgcgacacgctcccttcagcgtacagtattattattaatcactgcgacacgctcccttcagcgtacagcatTATTATTTATCACTGCGACAGGCTCCCTTCAGGGtacagtattattatttatcactgcgacatgctcccttcagcatatggtgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagcattattatttatcactgcgacacgctcccttctgcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctccctgcagcgtacagtgttattatttatcactgcgacacgctcccttcagcgtacagtattattattaatcactgcgacacgctcccttcagcgtacagcattattatttatcactgcgacaggctcccttcagcgtacagaattattatttatcactgcgacacgctcccttcagcatatGGTGTTATTATCTATTACAGCGacatgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtgttattatttatcacagcgacacgctcccttcaccgtacagtattattatttatcattgcgacacgctcccttcagcgtacggtgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactgcgacacgctcccttcagcgtacagtattattatttatcactGCGACACGCttccttcagcgtacagtattattatttatcactgcaacacgctcccttcagcgtactgcgttattatttattacagcgacacgctcccttcagcgtacagtattattatttatcactccgacacgctcccttcagcgtacagtattatCATTTATCACTGCGAGACGCTCCCGTCAGCGTATCTTAAAGAAGTATCGAAGCAACATAAAGAGGAGAAAAGCATTATGGCTGCATCTGTAACAAGGTATAAAGAAGCATTAGACAGAAGATACAATAAAGCAAATAAGCTGCTGGCATACCTGGATGTTCCAATGTCCTTCTCGCAAAAAGCATTTAAAAGCCACAATTCAGTTTCTCGAAAAACAAGTATCGACACCATTCAAGAACTTCAGAGGCTTACAAAATCCTTGACCGAATCTCTAGCTGACAAAGACACTGCTTTAAAAATACAACGAAAGACAAATAGGGTTCTAGGCACTCGAGTAAGAGAGTTGGAGAAAAAACTTAAAACCTTGGAAATATCTGGACTTTGGTCCTTGCATGGCCAGAAAGCAGATAATAATCAGTTGCCGCAGAATGGAACCATAAACCTACAGATCGGAGAAGAATCACAGGGTAACAAGGATGCAGAATCTGTTGTTATACCGAAAGATGACAATGAAAAACTCGACCAGCCAGCAGAAGAAGAACTCGAATTTGAGAATTCCTGTTGGGATCCGTATTGCGAAACAGTTCAAGATGTGAAAACAAAAAGCCAGAGTATTCAAGAGATATTGATAGATATACAGGGCGAGCAGACGAACAAGGACCTCAATGGAGATGTAAGTGATGAAAATTGTAGCAATTCTGATAAATCTGTTGTTGACACATACAGGGATGATTGGAATATTGACATGAAGTATCATCAGAGAAGTGAATTCGAGCATGGGGAATTACGTAGAACGAACTCGTGTCCAGAGACACCGTTAAGGACTAAGAGAGACGAATTTTTAAGTAGACCCGTTAAGTAG

Transcript

evm.model.HiC_scaffold_14.40

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRH3	Coiled-coil domain-containing protein 149 OS=Xenopus laevis OX=8355 GN=ccdc149 PE=2 SV=1
Q0VCP9	Coiled-coil domain-containing protein 149 OS=Bos taurus OX=9913 GN=CCDC149 PE=2 SV=1
Q6ZUS6	Coiled-coil domain-containing protein 149 OS=Homo sapiens OX=9606 GN=CCDC149 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006143 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00167 all species →	FGF	Fibroblast growth factor	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09789 all species →	CC149	Coiled-coil domain-containing protein 149-A	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002209 all species →	Family	Fibroblast growth factor family	Interproscan
IPR019179 all species →	Family	Coiled-coil domain-containing protein 149-A	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR008996 all species →	Homologous_superfamily	Cytokine IL1/FGF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21682 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_14.40.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.