Gene detail

Detailed information of evm.model.HiC_scaffold_14.403 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:5113250...5127900
NR annotation: XP_002164866.3, striatin-interacting protein 1-like [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_14.403

ATGGCGGATAATCAGACACCTTCCCTCCAAGTTACCGCTTTGGAAGGCAGAAAAAATGTTCCAAAGTTGAAAGAATTACTGAGAAGGCAAAGAAAAGACTCGGATACCCAAAATGATGTACCATCACTAGACTTCATCTACAATGATTCAGATTCATTACTCAATGAGCTAGCAGAGTTGTACAGTTATactgaagaaaatgaatttgcAGAAAATGCTGAAATATTCCACAGGGACTATTCTAAAACAGAGACTGAAGCATGGAAAGAATtaccaaagaagaaaaaacggCAATATTTGCTGAGAATTCTTGATAAACTTGAGACAGTTTCTGTTGAAGAAAGGAGGAATGCTGCCAGATCAGTTCTCTATCTTTGTCAAGGAATGTCGATAGATGCAGCAAGTAAAGAAGAACTATTAGTAAATATGTCACAAAATGTCTTGCTGCTTTATCAATGCGGATTTTTCTCTGTCATTCAACAACTACTTTTAATGGAAGCAGAGAGCATCGATGCAGTTCATGCAGCAGTACAGAAAGCATCAATATCAATCGCTGATAGCCTTGATTTGAGAATTTATATCAATATTCTGTATACGATGATTGAAGTGATtcgaatcaaccaatcaaaatcagAAGAAATGAGTAACGCTGCTGATTCTCTGAAAAATGATCTTGATGGAagtaaagatgaagaagatggtgGTCCATTTGCATTTTACCTTTTTGAACTCATTCTTAAGTTCTGTGCTGGAAGTGCACCACATTATCCAATCAAAAAGCTGCTCCTTCTCCTTTGGAAAACTATTCTCATAACCCTTGGGGGTTTTGACGAGCTTCTGGCCCAGAAGAAAAAAGTCCGAGTCGAAGCGGGCCTGTCTCCATCCTTTGAAGAGCAGTCACTTGAGAAATTCGGTCATTTACCAGAATTTTACTTGCGAGCATCGTCACCACagctttttaaagaaaataagaagaaatttgaagaaagatCTGCTGTTgataaaagagaagaagaaaaaagtggAGAGTTGACATCTGAAGAAGAAGCCAGTGGGTTCATTTCTGATGAAATTTTACTTAGGCCTAAAGTAAGACAGAAAGATGTTCAAGCATTTTTGCAGTCATGTAGAGCAAAGTACGTTGGATATCAGCTGTTGAATGACACGACATCCACTGCTGGTCTTCCAGGACCAATCATAGAGGGACTAAAAGTTCTTCAAAGTCATGTTTTTGTATCTCTTGCGgagttgcaaatcaaaagagaAGAAGACACTACTGATCGTCCATTCAGTAAGGGCAAGACTGATCTGCCTCAAACGAGAGCCGAGTTGCTCTACAAGGCATTACTTCCTGTATTACCTCAATACATGATAACATTGTTAAAAATATTACTGGCGTCTGCTCCTACTGCCAAAGCGAAAACAGATTCTATAAACATCCTTACAGATGTACTTCCAAGTGAAATGCCAACGACTGTTTTGCAGTCAATGCAGCTTGGTATCGATGTTAATCGACATAAAgaaattttagtGAAGTCAATATCAGCGCTGATTTTATTGCTCCtgaaacacttcaaagttaatcaTATATATCAGttTGAATTCGTTAGTCAGCATCTCGTATTTGCGAATTGTATCCCACTGGTTCTCAAGTTTTTCAACCAAAATATATCTGCTTACGTTTCTGCAAAAAACAGTATTCCTGTTCTGGATTTCCCAAACTGTTTGTTTGAAGAAAAGCATGAATTGACTGCAGAAACTCTGGAAAGTGGAACCGGAAGTGATTTTTGTTGGAGAAATTTGTTTTCATGCATCAATTTGCTGCGAATTTTGCAAAAGTTAACAAAATGGAAGCATTCAAGAACTATGaTGTTAGTGGTTTTCAAATCTGCACCAATCCTAAAAAGagctttgaaaataaatgaagagaCATTGCAATTGTATGTTTTGAAGTTGCTGAAGACGCAAATTAAATATCTCGGTCGAAATTGGAGAAAAAGTAACATGAAAATCATGTCAATGATTTATCATAAAATAAGGCATCGACTTAACGATGATTGGGCCTTTGGAAATGATCTTGATGCACGTCCATGGGATTTCCAAACAGAAGAGTGCGCATTACGTCAGAATGTTGATCTGTTCAACTACCATCATTACGAGGCTGGTGGAACACATTACCCATCCGATTTTCAACCTGTAGATAATGACCTCTGCAGCTGTTTGAATCAAAATGTAACACTCacgaaaaagttcaaaaggaaTACACCAAATGGCTTGATAGAGAAATATTCAATAACTCTGTGGACTGGGGAGAGCTACTTGAAAAGGCCTGAGTATAGTTTAGTTGTTCGGCCTCAGGAGTAG

Transcript

evm.model.HiC_scaffold_14.403

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C079	Striatin-interacting protein 1 OS=Mus musculus OX=10090 GN=Strip1 PE=1 SV=2
Q8C9H6	Striatin-interacting proteins 2 OS=Mus musculus OX=10090 GN=Strip2 PE=1 SV=1
Q0P5J8	Striatin-interacting protein 1 OS=Bos taurus OX=9913 GN=STRIP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11882 all species →	DUF3402	Domain of unknown function (DUF3402)	Family	Interproscan
PF07923 all species →	N1221	N1221-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021819 all species →	Domain	Far11/STRP, C-terminal	Interproscan
IPR012486 all species →	Domain	Far11/STRP, N-terminal	Interproscan
IPR040185 all species →	Family	Far11/STRP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13239 all species →	PROTEIN REQUIRED FOR HYPHAL ANASTOMOSIS HAM-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_14.403.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.