Gene detail

Detailed information of evm.model.HiC_scaffold_14.604 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:7964442...7971118
NR annotation: XP_047137886.1, apoptosis-stimulating of p53 protein 2 isoform X2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_14.604

ATGGCTGAGAAGCAGCGCAAGCAAATACTACGCAACAACCAGGAGCTGATTGTTAAGCAACAGCGATTGAAAGAAATGCAAGCCGGGTTGAAAAAAGCACCACAGGGAGCCCTGGGATCACCAAAGCCAGCTCAAAATGATGCATATGCTTCGAAACTTCGAGAAACCTACCAGAATCATCTTGGAAGACTGAGAGAAATGAAACTCGTTCAAGACGAAGTTGACTCACAGAGATTTGATAACGTGCAGCTAGCCCATGAGTTAGAAAGAGTACGAGAAATATTCACGTCAAAGCAACGAGAGCTTGTCTCCGCCGCTGCTAAAGTTGACAACTTGACGAAACAACTGGAGGATCGAAGAAACGGCCTATCAAATGCAAGAGTCACTCCTGAAAAACTTAACCGCCGAAGAAAAATTCGTGCCGCGCGGGATGAACTTGATCGTCTTAGAAAAGAACTCACTGTTCGAAATGAAGTAAATAACCAACAAGAAGAACAGTTAAATCTTCAGCAATCAACTCTGAGAGAAAAACGAAAAGAACTTTCTGAACTGAACAGAAAGATCGATCTTCTTGGAAAACAGCTAAAACCGAATCAGCCGTCCGATTATGACTCGGACACTTCCAATTCATCTGAGATTCTTAGTGGTGATGTTAACGGAAATAACAAATTCGGTTCTGGGTATATTTTTGATACACtgcaaaagaagaaagcaaCTGACCGCATTTTACAAATGGACCGGACACAATCTCTTCCCGCTGTCAATGGACTCGGTCGAATGGATATTCCGGGAAAGCTACCAGCCAATCAGGTCCCTTATTTCCGAAGAGGAAAGTTCTACGTTGCTCCGGATGGTAGAGAATTTGATAGACCGCCAACTGTAAATGACTACCCGGAATTTGCTCGTGGTTCCCAATCAAGTTTAAATTCGCTAGTATTACCTAGCGCCTCCCAGATAAAGTCGCCATCCAATGAGTCGCTTCCTGTTCCCAAGGCTGTACCTAACAATGGAAGCAGCCCACATCTGCCAAGATCTCGAACCGATGTCTTACCATTCTTGCAGGTTAATACCAATGGCCCATTCCTAGGCCCACCTAGGTCATCTTCTGCCAACCAACTTAACCCTGGCTCACCAAATTTCATGCAGAAGACCACGAAGTTCAATTCACAGTCTCCCTCATCCTCAGTCTCATCCCTCTCATCTATAGCATCAACCGATGTAGATCTCACTAAAACCGACAAAGAACGCTCGCCAACTGACGTCTTTGGCGACGGACGACGTGGAAGTGACGCTGAAATATGGATGAAAACGGCGGAATTCCGTACATCATCGCCAATATTGTCTGACAGAATGACGTCGGCTGTATTCGTTGATTGTGAGCTGACAGTCTGCAAAGACGCAATGAATGGTATTGCAACCAGATACCAAGACTCCTGCAAGAGTGATGCCACTGAAATTATGAATTTTCAGACGGGGGTACCTTCGCATGATTTGATGCCTGTCAATGAATACAATACACACATTACAACGGAGACAGAAGAAATTCCAGAACCTGATCTACCCCCGCCACTTCCAGAAAAGCGCAAACCACAGCTTCCGCCAAAACCCCCAGTTGCACCAAAACCAAAGGTCAAACCAGCGCCTGAACCTCAATCCGAACAGAGCCCCCTGGAAAAAGAAGAAGTGGACTTCGTACAAACATTCTCACATTCAAGACAACCGAATTTCACTGAACTAAATGATGATTTGAACAAACTTTCAGTACATGATCTGGTAGAGCAATTTAAAGATGCCATGCCTGCTGTGAAACAACCCGTCATGAAGCAAATTGGTAAGGATCATTACCCCCCGCCAGAAGAGGCAGACGTAGCAAGAAGCCCAGAAGATACTTCTCTTATGAACGGGGGTGATAACATTGAAGCATCAGGCAATTTAGGCGAAGCGTATGAAATGACTTTTGCTGATATTGACATGATCAGTGCAACACAAAATGATCTATTGCCTTATTTGAATAATATCGTTAATGAGCAACCGTTTGACCAATCAGATGACGACAATCTCTCCCAGTCGTCAGAAATCGAAAAACCCATCACGCCTGTCATCATATCAGTCCCCCCTGAAAAGATGCCGCCAACTATATTGAAGAAACCGGGGAGAGATAACAAAAAACGGGGGAGAATTCAGCTTGATCCTCATGCTCTCCTGCTTGACGCTGCGCTGGAGGGTGAGATGAACCTTGTGAAGGACATTGTAAATAAAGTTCCTGATCCTAGCTTCGCCAATGCTGAAGGTATAACGGCTTTACACAATGCTGTGTGTGGAAATCACAAAGAAGTTGTAAGATATTTGGTTGAAGTTGGATGTGATATCAATTCACCCGATAATAATGGATGGACCCCACTTCACTGTGCAGCGTTCTACAATGATATGGAGCTGTGCAAGTTCTTGGTTGAACATGGTGCTTCTGTCTACGCAATGACATATTCTGATAGACAAACAGCCGCAGAAAAGTGCTCACGTCTCGAAGAAAACTATGATCAATGCTTTGGTTATCTACACGACTGCAAGGAAAGTGTTGGTCGTACAAATAAAGGTGAAGTATGTTCTCTGTATGATTATACAGCCGAGAGAGATGATGAACTTAGTTTTCATTGTGGAGAGCAGATGAGGATCCTGAGACGGGGGGATACGAATGAAAAAGAATGGTGGTGGGCAGAGAATAGAAGAAAGGAAACTGGTTATGTACCATATAATTTGCTTGGTATTCATCCAAGAATTGCTGGAGAGGTATAA

Transcript

evm.model.HiC_scaffold_14.604

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13625	Apoptosis-stimulating of p53 protein 2 OS=Homo sapiens OX=9606 GN=TP53BP2 PE=1 SV=2
Q62415	Apoptosis-stimulating of p53 protein 1 OS=Mus musculus OX=10090 GN=Ppp1r13b PE=1 SV=2
Q8CG79	Apoptosis-stimulating of p53 protein 2 OS=Mus musculus OX=10090 GN=Tp53bp2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003798 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR047163 all species →	Family	Apoptosis-stimulating of p53 protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24131 all species →	APOPTOSIS-STIMULATING OF P53 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_14.604.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.