Gene detail

Detailed information of evm.model.HiC_scaffold_14.78 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:1092142...1098626
NR annotation: XP_001634827.2, LRP2-binding protein [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IND7	LRP2-binding protein OS=Xenopus laevis OX=8355 GN=lrp2bp PE=2 SV=1
Q9D4C6	LRP2-binding protein OS=Mus musculus OX=10090 GN=Lrp2bp PE=2 SV=1
Q569C2	LRP2-binding protein OS=Rattus norvegicus OX=10116 GN=Lrp2bp PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006157 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08238 all species →	Sel1	Sel1 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052323 all species →	Family	LRP2-binding protein	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44554 all species →	LRP2-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.