Gene detail

Detailed information of evm.model.HiC_scaffold_14.82 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_14:1142484...1157621
NR annotation: XP_020899981.1, KAT8 regulatory NSL complex subunit 3 [Exaiptasia diaphana]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_14.82

ATGATGCCTGCTGGACTAATCAATAATAGCAAAGCTGAACCCACTCGGCAAGGATTTATTTACGAATTCCAAAAATCATTAACAAGAAAACAGTTGGTTGATCTGATATTATTAGAGCACACTTATGCAAAGCCGTCTTCACTGGACCCTGATTTCAACAGAATCCACTCAACAGACATCTTGTTATTGTCAAGATCAGAGAATAATGAAGTTGGAGATGAGCAACAAAACATAGACGAGCTGGATATTTTGGAAGTTTTGAAACCCGAGCAATCGTTGGTTGGTTATGACAAAATGTCAGCTGCAAGCCAGATGTCTGAATTAGAAAATTGCTTTCAGTCTCTTGTAAAAGAAGAGACATGGCAAGAAGATGAAGCATTATCAAGGTGGATTGGTTGGACAAGAGATCAGACAAAACTTCACGATCAAGTATTGAAAGTGTTGTCTACTTACCAGCTAGCAAGATGCACATACAAAGGAAATGATAATGAAGAAATATTACGACATGCTGCCATCACTAAAGCAGCAAAACGATTTCGCTATATTGCAGCTGGTGTGACCTGGgATACAAGAGCGATGTCGTGGCTACATTCAGTTTTGATTGATGGTTTGAATCCTTCTTTATTCCTATGCTACTTGGAACTGCTACAAGTTTTAATTTCAAAGgaaaaaaagaaaattcaagaatCCGAAGAGACAGCAACTCAGAATAAACCATTATTACTCATGTTACCAAGAGGGCCTTGTCTTAACTTGATCCATCCAAAACGCTTcacattttggcaaaaacagCTATCTAATGTTACTAAAACGGCACCAATCAACGTTCATTGTCCAGATAAAGATGCAGACTTTGGCAGCTCAGCTTATCTTGAAAATATCATTGGAATCACACGAACGAGAATTTTCACgTCATACTCCAAGTGTCCTGGACGTCCGGTTGTTTTAATTGGCTGGTCTGTTGGTGCACTCTTGGCTTGCCAGATTTCATTGCTTGAAAGTGTATCTGGTGTCATATGTCTTGGATACCCATGTAACGGACTAGATGGTCTTCGGCAGGTTGATTGTGATCCCTGCCTGGACGTAAAATGCCCAGTAATGTTCGTCATCGGAACACATTCAGCCACATGCTCAACAAATTACATTGAGTCTCTGCGTGAAAAGATGCGTGTAGATACCCGGCTGTTGATCGTCCCTGGAGGAGACGAAGTGTTGAAGCTCACCTCATCACATAAGAAAAGAGTGAAAATGACGCAGAATATGGTCGATCGACTTATCATGGATGATATCGAAGAATTCATCAGTGGCCTTCAAGCAAAACCAGACAAATCAAAGGACATCGCACGCCCAAACACGCCTCTTCCTGGAATTCAACCGCTACAGATGGACAGAAAACGCAAGCACAAGAAAGGTGAGTTCGAGAAGGAAgttgttgagaaaaagaagaaaaagtcgCCACCAGTGCTCAAGAAGCCCATTATGGCGCTGAAGAGAGATGCTAGTGATTATGTATACGATGCATCAAAAGGTAAGGGCATTGTGACCGATATTAGCAACGCTGGTGCTTTTGGTATTAAGGAAGGTATTATGACACCATCTGAGCTGACAAAGGCAGCTACCAGGAATATTGCATCAAACGCTTCGTCTGGAGAGGAAACTACACCTGGACTGACATCATCTCCTGCAATTTTATCTAGTCTCATGTCTACTAAACACCCTGACAAGATTCCAATATCAAGGCATGGGTTGAAGAGCCAGCACCCTAAAATGAACGAGAAAATGCTTAAGAAGCTGAAGATGAATAAAAAGCCTCTGCACATGACAAGGCCCATGTCTCCTCAAAATCCAACTGGCCTAACTTCTATTCAGCAGTTTCCTGCGACTTCTTCAATTCTTCTTTCCAGCTCTAGCGCAAAAGTTAGGTTACAAGATGGACGGATATTGTGTCTTCAAGGGTCAGACTCGGATGTTTCATCTCATGATTCGCAAACTTTCATATCGACGATGTCAACTTCAACAAAACCACCAACTCCTATAGGAATCACTAGCAATAACAGAGATATACATACAGCTCAGCTTCAGTCGATGTTAGCCGCAAAGAGTTCCATATCTACTGTAGGATCTTCTTTTAACCAAAGAAGCCTTTTAGTATCACCTCAGTTGTCTTCATCCGCTACTATATCACAACAATCAGCTTCTTTCGTAGGATTTGCAAATCTTGTCGATACGTCCAATGTCTCTACTAGGCCGGATTCTGAGACTGTATCATCTCCATCAGCAACTCATGGAACAGCATCTCCTGCTACTATACAAACAACCCAATTGACTCCGACTGATCTGAAGTACCTTGCAAAGTTGTTCGAGAAAAGCAACGAGAGTACAAACGAGGCTCTAACGGTTGGAAAGACTCAAGAAAAGCTCAGTGGAATCCCAACTAGTCCCATCTCTGCTAAAATAGGAATCGGGACGCTTACCAACCTACCGAATTCGGATGGATCTCCTCCAGGCTCAGGTACAAGAGCGTCACCAAGCTCTAAGCAGTTGTCAGCAAAAGAACCGAAAGATTCAGTTCTTCCTTCCGGGCTAGAAGCGCCAAAGATGAAATCATTGCTCGCCAAAAACCATTCAACTGGCAACAAACCTCCAGCTTTTCCAAAGAGGGATCTCTTCGATAAGCAGAAAATGGCTAGTAAGAGCCGTATGCTAACGAAACCTCAGTCTGGCATCATCAGTATCAACACTCAAACGAGCTCACACCAGCTGAAAAATCTACCGGTCACAGTCACAATACCAGCTCATAACAGTAGCCGATTAGTAGTATCATCGAATAACAAATCTCAGCCTGAAGTTTTGAAACAGGGAGTAACCACAGCATCGGCTCAATCCTTGTTGACCCAGCAGCGCCTTATTTTGTCTTCTGCATCAACCAGTCAACAGACGAATACAACGAAATCGACAGTAGAATTGTCTCAGCTTATCAGAAAAGTTACTCCTACCTCATCAAGCATTTTTGAGGCTGTAAACAACAGACAGATGTCGAGCTCATCGAAGCTCACGTGCAATGCTCAAAGATCATGGAACATTGAGGAAAAGTGGCTCAGAGATAAAGCTAATTGGTTTATTGAACCAAAAGGAAGAAGTCCTATGACGTCACCTATTCATTTCTCTGTTCAAAGCAGGAGTGCCCCTGGATCTCCTAAGGCTCAAAGTCCAACCATTGTGTTGACATCGAAATCCGACCCACCGACACCGAAGGCTGATTCCAGAAAGCAAGATGGAGTTGATGTAGTGGCTAGAGAGGATAGCTCAGAAGACAAATCTGCCACTggtaaattttcagaaatctcTACTGATGTTGATGCACTAAGTTCCAAAGCAGTGCCTTTTGGTAGTAATGCCTCTGTAATACATAAAGCTCCACAAAGCTCTATTATTGAAGCAGACTCAAAGGTGGTCATACCTAAACCTGCAACAAATACCTCTGCAGGAAATGCCGCTGCACCACATGCCTCTGCAACAAATGCCTCTGCAACAAATGCCTCTACAACACATGCCTCTACAAATTTCCCTGCCTCTGCGACGTCTGTAGATGCAGAGAAAGGTACAAATAGTGTCATCTCTGCAGGTAAAGATGCAAAAGCAGCCATTACCAAGCCTATTGTTTCTAACACTACCATTGCAGTCTCGAAACAACAGTTGGCATTTAGCAGACCAGCAACTGTGCAAACAACCCTGCTGCGATCCTTGAGTGCTGCCACGctttcaccacagcaacaaGAATCTATTTCAACACTACTTAAAAGCTCTGGAACAAAGAAGCTCAAGGGCAGTGCAAGCAAATTTCTTAACGATTCATCAAAGATTCAGAATAAGGAAGAGCAGAAAAGTGCACTTGATCTTGCAGGGGATAGTATTGTAAAGGAATCAGGAAAAGATGCATCTTGGAGGAATCAGTCTGTCAAAATACGACATACTGATATCGACGTTGTTAATGGGCATATTGTAAGTGCAGATAAGTCTGGCTTGGTGTCCAGCGATCAGAGAAAGAGCAATGCTAACTCGAATGAAACTTCGAAACGTTTCGGTGATAACACAGAATCACAGCTGCCATTGGCTGCAAGAAAAGAAGTGAGTTCTGGTACTGAGTCTATTTCTTTCTCTAGGAATAGTAAAGAAACAGAGCGTGAGAAATCGCAGCAGAATCGCAGTATTGAAGGAAAAGAAGGGGATAATCCAAACCAAAATAAAGTTGTACATGTGAAAAGCAGACCTACCATTTCACTTAACAACGCAACCAGTCCGATGGAGTTTAAAGAGTGTGCAGTTCCACTGAATAAAGTGGAGACGGTTAGAAATGCAGTAAGACAGAGTGATTCTATTCCAAGATTGAAAAATCAAGAGCTTCATAAAGTGGAAGGTAAAAAACTTGATATAGACAAGAATGAGAATGGGGTGAATTTAAGCAAAGTGTTCCAAAGAGATCACCCTGCAAAAGATAAAGCAACTATCATTTTGCAAGGTCGAGACAATGCAAAATCTTCTGGGAAAATCTCTGCTGATAGCTTGCCAAACAGAAGCATTAGTGAAGAAAATCGACGAAAACGTCACAGAGAAGAACCCAATGATATTCAGGACTTTGATTCAAGTGAAGATGAGGAAGATAAGCCGATCGCTAGACTTGTGAGGAAAGTCTCTTCTGTTAACGACAGAAAAAAGGTGTCTACACCTCAGAAGACAGAAGAGTGA

Transcript

evm.model.HiC_scaffold_14.82

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q499B3	KAT8 regulatory NSL complex subunit 3 OS=Danio rerio OX=7955 GN=kansl3 PE=2 SV=1
Q9P2N6	KAT8 regulatory NSL complex subunit 3 OS=Homo sapiens OX=9606 GN=KANSL3 PE=1 SV=2
A2RSY1	KAT8 regulatory NSL complex subunit 3 OS=Mus musculus OX=10090 GN=Kansl3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005538 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20408 all species →	Abhydrolase_11	Alpha/beta hydrolase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR046879 all species →	Domain	KANL3/Tex30, alpha/beta hydrolase-like domain	Interproscan
IPR026555 all species →	Family	KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13136 all species →	TESTIS DEVELOPMENT PROTEIN PRTD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043981 all species →	Biological Process	obsolete histone H4-K5 acetylation	Interproscan
GO:0043982 all species →	Biological Process	obsolete histone H4-K8 acetylation	Interproscan
GO:0043984 all species →	Biological Process	obsolete histone H4-K16 acetylation	Interproscan
GO:0044545 all species →	Cellular Component	NSL complex	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_14.82.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →