Detailed information of evm.model.HiC_scaffold_147.69 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_147:654451...657752
NR annotation: XP_002157039.2, exosome complex component RRP42-like [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007592 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03725
all species →		RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036345
all species →		Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR015847
all species →		DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR050590
all species →		FamilyExosome complex component Rrp42 subfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11097
all species →		EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467
all species →		Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan
GO:0017091
all species →		Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473
all species →		Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476
all species →		Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928
all species →		Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028
all species →		Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035
all species →		Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038
all species →		Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042
all species →		Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_147.69.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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