Detailed information of evm.model.HiC_scaffold_15.76 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_15:918058...928506
NR annotation: XP_032832712.1, elongation of very long chain fatty acids protein 4-like [Petromyzon marinus]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9EQC4Very long chain fatty acid elongase 4 OS=Mus musculus OX=10090 GN=Elovl4 PE=1 SV=2
Q9GZR5Very long chain fatty acid elongase 4 OS=Homo sapiens OX=9606 GN=ELOVL4 PE=1 SV=1
Q95K73Very long chain fatty acid elongase 4 OS=Macaca fascicularis OX=9541 GN=ELOVL4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000870 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01151
all species →		ELOGNS1/SUR4 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002076
all species →		FamilyELO familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11157
all species →		FATTY ACID ACYL TRANSFERASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009922
all species →		Molecular Functionfatty acid elongase activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0019367
all species →		Biological Processfatty acid elongation, saturated fatty acidInterproscan
GO:0030148
all species →		Biological Processsphingolipid biosynthetic processInterproscan
GO:0030176
all species →		Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan
GO:0034625
all species →		Biological Processfatty acid elongation, monounsaturated fatty acidInterproscan
GO:0034626
all species →		Biological Processfatty acid elongation, polyunsaturated fatty acidInterproscan
GO:0042761
all species →		Biological Processvery long-chain fatty acid biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_15.76.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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