Gene detail

Detailed information of evm.model.HiC_scaffold_151.24 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_151:155594...159059
NR annotation: CAB4014243.1, Transposon Ty3-G Gag-Pol poly [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_151.24

atGGCAGCGTCACAAACTGACTGTGGCACAGGACTGCGAGTGGAAAGTAATAGTTTCTCTTTCTTGCTAAGGAAGAGGTCTTCCAGCCATAATGAAGAGCCATTAAACAAACCATCTACATTAGAGTTGTCCTTAAGTAAAGCATCATGTGTCAATattggagaagaagaaggagcacATTTTTGGGTAGTAACTGTGAAAGGTGTAGGAGGGCTTACATTATCTGTATCAAATGTCCTTGGATTGAAATTGCAAACACCAGCAGGAGGGGAAGTCCAAGAAGAAACGCCTTCTGAACGGCCGTCTATCCAAAGTATTTATCGAAGACCGGAAAAGTACAAAATTGGGGACGATTTCGATTTGTTCTGGAGAAAGACTCTGCTGTATTTCGAGGCACTCGATTTAAAGGATGACAAAAAGAAGCGTTTGGCTTTTCTGGTTAATTTGAGTGAGGACGCATTTCGAATTGCAGAATCCGTTGAATTCCAAGACGATTTCACAACATGGGGCAAAGTATTGTCTCAGAAATTTGAGAAGAATACGACTGTTACTGAAAAAAGGTATACTTTTGCCAAGAGAATGCAAGAACAAGGTGAAAGTGTAGACAATTTTGCTATCTGTCTAAGAGAACTTGCTGCTAAATGCAATTTTCAAGGAAGTGAATTTGAAAACCGTTTGCTAGATCAATTCATTGTTGGCCTAAGGGATCTAagcattcaaagtaaattgTTACAAGAGCCCAAAGACAATTTGAATGAGGCTATTGGGCTAGCAAGACGTTTTGAAGCTGCCAAGAGTACAGTTGGAGTGTTAAAAGGGAGAAATCAAGAGATGACAAGTTTAGTAGCCAgtgttcaaaacaaaaagtGTTATGTATGTGGCAAACTGGGCCACATTGCAAAGAATTGTGCTAACAAACATGGTTTTCAGTCAAGGCAAGGGCCTAAGCAGTctgttgtttgttttcattgtaaACGCCCAGGTCATCTGATGAAAGATTGTCATGCACTTCAAGCTGTTGGTAGAGCAAATAAAAGACAAGCTTTGGTTATTGAAGCTGAAATAAATGGCCAACCAACTCTCTGTGTGCTAGATACAGGTGCATCAGTTTGTGTAATGAGTCAATCCAAATGGGAAGCAGTTAAAACAACTGAACAGCTAGAACCATCTGACATTGTGGCTGAGGCTGCAAATAATATGCCTCTGGGTATTTTAGGAAGAGctgttttgaaacttgtttgtgcAGACAAAACATTTGATGTTGAATTTTACATTGTTGACAATATGTCACAAGACATTTTACTTGGTCTGAATTGGATGGAAGAGTTTGGGCTAACACTAGTTGTGAAGGACAGAAAGTTGATATTTGcagatggaaatgaaatgaaattattcatgtTGGATTCCAGCTTACTGGATTCAAGTGTTGCTCTTTGTGAAGATATTGTTGTACCCGGAAAATATGAAATGGTTAGTAGAGCTAAGTTGAGCAACCCTAGTATTTCTGATGCTTTGCTGGAACGAAATGAAGCATTAGTGAGCAAAGGAGTCATGGTCGCAAGAGTTATAGTTAGGCCTAGAAGTCAGACAGTACCAGTGCAAATTATAAACCCAGGTGACAAAGAAATCAAGCTATTTAAAGGAACCAAGTTGGGCtcattgcaaacttttcaagaagattttaagGATCCAGGAGTAGCCGTATTAAATAAAGAGGACAGGGACATAGAGTTTCAAATGGGTGAGCTAGAAGAAAACGAGAAGAAGTCTTTAAAGGCATTTTTGCTTGGCCAACAGGATATTTTTGCAACTTCAGTCAAGGAAATTGGAACAACAGATGTTACCAAGCATGTTGTGGATACAGGGAATGCTAAGCCGATAAAGCAGTTACCAAGAAGATTGCCACAAGCTTTGAAACCCGTTGTTGAGAAGCAGGTACAAGAGATGCTTGATGCAGGAGTGATTCGTCCAAGCACTTCACCATGGGCTAGTCCCATAGTACTGGTTCGTAAAAAGGATGGTTCGTGGAGGTTTTGCATTGATTTTCGGAAAGTGAACGACGAAACAGTTAAAGATGCATATCCACTTCCTCAAGTGAATGATATAATTGATTCTTTGAATGGCCAAATGTATTTTTCTACCTTGGATTTGACTTCTGGTTACTGGCAGGTGcctgttgaagaagaaagtgtTCCAAAACTGCATTTGTGA

Transcript

evm.model.HiC_scaffold_151.24

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010053 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13975 all species →	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_151.24.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.