Detailed information of evm.model.HiC_scaffold_158.6 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_158:110664...122647
NR annotation: XP_047132785.1, denticleless protein homolog isoform X2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NZJ0Denticleless protein homolog OS=Homo sapiens OX=9606 GN=DTL PE=1 SV=3
Q3TLR7Denticleless protein homolog OS=Mus musculus OX=10090 GN=Dtl PE=1 SV=2
Q5ZJW8Denticleless protein homolog OS=Gallus gallus OX=9031 GN=DTL PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006236 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10046
all species →		BLOC1_2Biogenesis of lysosome-related organelles complex-1 subunit 2 Coiled-coilInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR019269
all species →		FamilyBiogenesis of lysosome-related organelles complex-1, subunit 2Interproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051865
all species →		FamilyWD repeat-containing CDT2 adapter proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22852
all species →		LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0030674
all species →		Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_158.6.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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