Genomic Location: HiC_scaffold_16:2199495...2203158
NR annotation: XP_027048313.1, uncharacterized protein LOC113675905 isoform X3 [Pocillopora damicornis]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_16.152 |
| Transcript |
| evm.model.HiC_scaffold_16.152 |
| Protein |
| evm.model.HiC_scaffold_16.152 |
| UniProt accession | Description |
|---|---|
| A6LPR8 | Large ribosomal subunit protein uL16 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=rplP PE=3 SV=1 |
| C4ZBS6 | Large ribosomal subunit protein uL16 OS=Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) OX=515619 GN=rplP PE=3 SV=1 |
| Q5E8A8 | Large ribosomal subunit protein uL16 OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rplP PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006607 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00252 all species → | Ribosomal_L16 | Ribosomal protein L16p/L10e | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016180 all species → | Domain | Large ribosomal subunit protein uL16 domain | Interproscan |
| IPR000114 all species → | Family | Large ribosomal subunit protein uL16, bacterial-type | Interproscan |
| IPR036920 all species → | Homologous_superfamily | Large ribosomal subunit protein uL16 superfamily | Interproscan |
| IPR047873 all species → | Family | Large ribosomal subunit protein uL16 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12220 all species → | 50S/60S RIBOSOMAL PROTEIN L16 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0005762 all species → | Cellular Component | mitochondrial large ribosomal subunit | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0032543 all species → | Biological Process | mitochondrial translation | Interproscan |
evm.model.HiC_scaffold_16.152.Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |