Gene detail

Detailed information of evm.model.HiC_scaffold_16.288 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_16:3905248...3915045
NR annotation: XP_041458371.1, protein OS-9-like isoform X2 [Lytechinus variegatus]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_16.288

ATGTACAAATTCATCTCAAGAATATGTGCTTTCAGTGTTTTACTTCATGGTTGTAAATTGGTATCCTGTTTCTTTGATTTGGAAGAGCTGCAAAGCGTAAAATATGGAGTTGAAATCACGAAAAAACCAGTCATTTTTTCGCAGGAGCCATTATCAGATAACATCCTGCATTTATCTTCAAAATATGGACAGATGTATCAATGTGTGATTCCCAAAtggaaagatgaaaataaaattcaaaatgagACCAATAAAACAGCTGAAAGCAATGCGACAGTTGCATCAGTTCTGAACAACACATTGCACGGAGAGTGCTTATTTTATACACAAGGCTGGTGGACATATAAGTTTTGCTATGGAAATGAAATAACACAATTTCACGAAGCAGAAAATGGAATTATTCAAGGAGATGTTATCAGTCTTGGGGTATTTGAATCAGAAAAACAATGGAATGAAACGGATTCTAAATCGAAATCAAACTCCAATTTATATCACACTCAAAATTATACAAATGGATCAAATTGTGATTTAACTGGAATGCCAAGACGGACCCTAGTAAAGTTCTTTTGCAACGAAGAAGTCACGAATAGCGTCGTATCATTAGAAGAACCCGCAACCTGCGTTTACACGATTACCGTGCACAGTAAAGAGCTATGCAAGCATCCGCTGTTTACGCCACCGAAGAAAGTCAAGCCAAAGGAAATCACATGTTCTCCTGCGTTGACCAAAGACCAGTACGACCAATTTATGAAAAAGGAGGAAGatatgttgcaaagaaagaaagaggAGGAAATTAGAAAGTTAAAAGAGGAAAGCGAAATAAGTGAACAAAATAATGACAGAAACAAGAAAGTCAAAGGGTTACCAGATTTAATGAAAGGTCTGTTATCTGTTGGTAAAATGTTTGATGCCATTGCTTCTTCTGTTGAAAAGAAATCATTAAATAAAGAGGATGAACCTGCAGATAAGTTGGAAGATCGTAtggaagatttggaaaagtCTACTCAAACTGAAGAACCTCATAGAATGAAACAGAAGGGAGAGGATGGAAACTTTGACAAAgAAACTGAACAAGACCAACCGGAAAGAAACCCATCCAATGCTGATACTCAAGAAGTCAAGCCAGAAGCAACTAATGTTGAAACAGAAGAATTGTTTTCAGACAATAAGATGAGTAAAGGAGAAAATATGGCTTCATCAGAAGGCAGGTTCATTGAGAGAAATGGGGAGAAATTCATCGTTAAACCAGACAGCCCTGAAGTGAAAAATATCTTGTCTTTGCAAAAAAAGTTGAAAGAAATCGACGAAAAAGCTGAGTTCTTAAGAAAACAAGACCGCAGAATGAGGGGTGTTTTGGAAAAGCAATATGTCAGGACAAGAAAAAAAGCTCTTGACCAGATCAAAAGTTTCAAGAAATTGCTGCAGAAATTAGTCGATAAAAAGGCCAAAGTTAAATTCCAAAAGTCAGCAAACGCTTTGGATTTATTGATTGAGAAAGTTACGAAGAATATCAaaacttataaaaagaaaatccGCGACCTTGACGCCAAAATGAAGGCAGCTCTTGAAATAAGTGAAAACGTTGACAAgcgatatgaaaatctttttGGAACAACAGCAGCAAACACAGAAAAGTCGAGCTTAAATACAGGAAATTCTGAGAAAATTACTCAGATATTAAAAGACGTTTTCAAAAACGCAGCGAAAAAACCAGGCACGGATCGTATCGCCATATCAGGAGACCAGCTTCATTTGGACGAAGCAACAGAGAATGCCGCAGATATTGACAGCGAAGAAGAAATCACTGATAAAGAGCCCCAGAAGGATAAGGTATTAGATGCAGTAATTAAACTGATGCAgatgcaaaacaaaaagaaaaatgaagaaaataaacaaaagatgAGACTAATACTGCACAAAATAGTAAAAATTCCCAGGAACGGGAAAAAGATTGAGAAAATGATCAAGGATAAATTAAAGAAAGCTGGTGTAGATGTTGGAGCTAATATTAAGATAAAGATAATCACCAATGATGCACAGATGTCAAAGATGGGAGAAGAAGGTGAATCTACCTTACTAAATCAGGATACTGCAACGCAGTTCAAAGATATGCTTGTTAATCTTCTGggtggcgGAGAGGAAAAGGTTAAGGAAGAACGAAGACATGCAACTCTTGAAGACAATTATAAATTTGTTTATAACCAAGATGGCAATAATGAACAAGTTGAAAGAACTGAGGAGCAAAATGATAATCAAATTCCACTATTATAG

Transcript

evm.model.HiC_scaffold_16.288

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K2C7	Protein OS-9 OS=Mus musculus OX=10090 GN=Os9 PE=1 SV=2
Q3MHX6	Protein OS-9 OS=Bos taurus OX=9913 GN=OS9 PE=2 SV=1
Q5RKH6	Protein OS-9 OS=Rattus norvegicus OX=10116 GN=Os9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07915 all species →	PRKCSH	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR045149 all species →	Family	Protein OS-9-like	Interproscan
IPR012913 all species →	Domain	Protein OS9-like domain	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15414 all species →	OS-9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0030970 all species →	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_16.288.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.