Detailed information of evm.model.HiC_scaffold_16.553 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_16:7369246...7370978
NR annotation: XP_011678644.2, ATP-dependent DNA helicase PIF1-like [Strongylocentrotus purpuratus]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7ZV90ATP-dependent DNA helicase PIF1 OS=Danio rerio OX=7955 GN=pif1 PE=2 SV=1
Q1HG60ATP-dependent DNA helicase PIF1 OS=Rattus norvegicus OX=10116 GN=Pif1 PE=2 SV=1
Q9H611ATP-dependent DNA helicase PIF1 OS=Homo sapiens OX=9606 GN=PIF1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000529 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21530
all species →		Pif1_2B_domDNA helicase Pif1, 2B domainDomainInterproscan
PF05970
all species →		PIF1PIF1-like helicaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR049163
all species →		DomainDNA helicase Pif1-like, 2B domainInterproscan
IPR010285
all species →		FamilyDNA helicase Pif1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10492
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000723
all species →		Biological Processtelomere maintenanceInterproscan
GO:0003678
all species →		Molecular FunctionDNA helicase activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06947GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9EC:2.7.1.-
Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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