Gene detail

Detailed information of evm.model.HiC_scaffold_16.72 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_16:1120878...1131855
NR annotation: KAJ7389824.1, INO80 complex subunit D [Desmophyllum pertusum]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_16.72

ATGGAGCTTCTCGGGTTTGGACATAAACCAGGAGTACTTTTTGCTGTACCAGTATTGAATAAAGAACAAGATAACTTCAAGGAACATCCAATGTTCGAAGGAAAGAATATTCACTCCTCCCCAGTGGATGGTAAACTGTTGTGTAGTTACAGTGAAAAAGTTTGCATGCAAAGACGTCTGAATGGGTTTGCATTTTGCATAAGACATATCTTAGAAGACAAAGGTGCTCCATTCAAGCAGTGTCAGTTTTTTGCTAAATATAATAAGAGCAGATGTATCAATCCTGTTCCGATTTCAGAGAAAAGAAACTATTGCAACAGTCACATGCAAGTGCTTGGTATGATACCAAAGAAgttcaagaaaaagaaagaagggGACAAATGCTTAGTACCTGGTCTTTCAAAAGAGAGCAAAGCAAGAGACCTAAAGCATGATGTGACCTTTGAAGCAGACTGTAAAACTGAGAAAAAATCTAATCATATCACCAAAAACAATCACCACCATCATAAGCATTCAAAACACTCTCATAGCACTAATAAAAAAGCACATAGCAAGGTTGGAAAGCAAATCACAGAAACTATTATGCCACCATTAAGATGGAATCCTTATGGTCACATGTGGAAGAAATTGCTTGATAGGAGGAAAGGAAAGCGTTCTAAGACTGGAAATATTTGTTACTCATCTGTTGAAGATTTCAAAAAAGATAAAGCGGAATGTGAAGAAGAGTCAAAAGATCTTTTCAAAAGTTATATGTTTGAGAACGTTGAAGAAGATGTTTTGGATTATGATGAAGTTCCAGTTCAAGAAGATTCAGTATCGGATTTATTAACATTTTCGGGTGATTTCCAAGAAGAAGAGATCCGTAGTCGACTGTCGCATCAGATAGCACAACTGAGGCAAAGCATCAAAACGAGGCTTGAAGACAGGAAACTAACTTATGCTTACCTAAATGCACTTGTTACTGCTTCAAAAACAAATGCTGCTGCCACAGCAAATGCACTGAGTACAAGCAGTggacacaaaaatttcagGAATCGAAAGCTCGCAGCTGCGAGGGTTAAATGTGCAGCGAATCTGATACCGAATCTGAAGTGCTCTAAGAATGCTTTGCCATACTCAAGACATTGTTATAAACAACCTGCCGGGTTTAGAATTCTCAATCAAACACCCCTAGTTCACCCTGACTCCCCTGGggcgacaccctCTCTAAACGCGAATGGTTCGTcggagctatcatttgatatggACAGTGCTTCTTTGTCATCGCCATCGCTGTCAGAAGATGAAGGACGTTATCCCCTGGTTAACATGGGTCGCAGCCATCAGGATAGCTTCAACTTTGATGACGACGAAGATATGCTTCGTAGTACTGGATTTAATATGGGTGTCATTCCGGACCCAAGAGATGTTACGTCACCAACGTTAATGCAGCTGTCCTCAGAAACTATCCCAAGTACATTATCTCTAGGTGCCCTGTGCTCACCTTCGAAGCTCCCCCTAGAGAAGTCGCTGTTTGAATCGACGTTGCCGTTAAAGCAGGAGCCCCCGTCTCCGGGCTTTAGACGCTCGCTTAATACGTCATTTGAATTAAACTCGAATTCAGGTCGAGGAGATATGCTTGCCGGGGGTCCGCCACGATTGATTGGGAATATAAAATCGGATGGACAGTTTATATCGAGGTCTTCGCTGTTGAATTCAGATCGATATGGCGTCACTGGGACGGTAAATAGTTCTGTACATAACCACGTGAACTCTTCCAACATGAATTCAGTCTCAACAAATAATTCAACTTGGTCTAAGTTTACATTGTCAATGCGAAACGATAGTCCTAATGCGACCGGTGGTTTTATAAGAGTTGGACCGTCACAGAACAGCATATACTCCCCACCTTTTACTTCACCGTCACCGCGTTCAAAAGCCAGCATATTCAAGTTCGAGAACAGTTCCAAAGCAGTCGACAATGATCTGGTCGTGTTACCAAGAAACCCGCCTCCACCGTACTCAGCTGTGATTCAGGATAAAGCCGTACCGCTTGAACGAAGATACGAGGCTGAACCTCCTTTACAGAAAGTCAATCCTGATATATTTCTGTCCACCATGTttacaacaacatcatcaagtACTGGTTCATGA

Transcript

evm.model.HiC_scaffold_16.72

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q566I1	INO80 complex subunit D OS=Xenopus laevis OX=8355 GN=ino80d PE=2 SV=1
Q66JY2	INO80 complex subunit D OS=Mus musculus OX=10090 GN=Ino80d PE=2 SV=4
Q53TQ3	INO80 complex subunit D OS=Homo sapiens OX=9606 GN=INO80D PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003964 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13891 all species →	zf-C3Hc3H	Potential DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025927 all species →	Domain	Potential DNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16198 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11668	INO80D; INO80 complex subunit D	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.