Gene detail

Detailed information of evm.model.HiC_scaffold_16.97 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_16:1437872...1477363
NR annotation: XP_012559044.2, partitioning defective 3 homolog isoform X4 [Hydra vulgaris]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_16.97

ATGAAGCTTACAGTGTGTTATGGACATGTGAAAGTGATAGTTCCTTGTGGCGATGGGGAGCTGAGTGTAAAATCACTGATCGAAAAAGCTACTGCAAGATACCGAAAAGCGACTAATAAGAATTATTTAGACCATGTATTGGTGAGATGTTTGCAAACTGAAGATGGTGGAATATTGGACCCTGATGATGTTGTTAGTGATATTTGTGATGACAGAGATAAGCTGATAGCTGTCTTTGAAGAAACGATTCGTCATCGACCTGAGAATAACGGAGACAGTGCCAGTACATCATCTATAGATTCGCATCAAGACACCCTGACAAATTCATTTGATAGAGTTCAACCTGTCGCTCCACCACCTGAGTTTCAAAATGAACCAACTGAGAAGCCGCCCTTGGTTGTCCGGACAGGAGCCGATCGAAGGGAGGGCACTCCTTGGAGAAAGGAACGACCCTGGAGATCGAATGAGAGTTCGAAAACGTCGTCATTGTCACGTGGgtcgtcatcagcatcatcaacgcCAATGTCAAGCCCTGATGTTGTCAAAGGAGAAACTCCGAGGTTTACAGCCTTTGATAGGAATCTGAATAGGAAATCTCTTTCTGTTGGTCATCCCTTGTTGTATAGCTGGATTGATGCGCAGGAGAGAATGAATGAGAATGCTATGTATTCGCCTGGATTCGCTTCAGATCATCAAGGATCCTTGGAAAAGCCATTTTCTCCAGGTCGTGATAGCTTCTCAAATCCATCGACGGCAGATTTCGATGATCTCGATGACCTGTCGTCATCTGCAAGCGAAGAAATCGAGCTTGAAAACGATCGTAAGACTGACTTAGGCCTAAAAGTACAGGGATACAAAAACGCTGAAGGCAAAGAACTTGGTTTGATTGTACATGAAGTAAAGAGCATAAGTGGCAGAAATGGCTCGTTAAATGTGGCTGATAGAATAACCGAAGTGAATGAGGCTGAAGCGATTTTGAATCAAGCTTTAACTGGTGATCGTGTCAAATTAAAACGCACTCGATCCCATCGTTTCGTCAGTGTTAAAGAATCGAGCAAAATGACGTCATTAGAGAAGCAAAATACCCTGCCTAAGATAGCAGATGCGGTTATAATGAAGAGTAAAGAAGCGCCAAGACCGATTAAACGTGTGAAAGATGAAGAAATTCATGAAGCACCTATCGAagATCCAGAAGATTTGAAGCCTGCACCTAAAGCTTTGACTGGAAAGAAATTAAGAATTGAATTGATGAAAGGTAAAAGTGGCCTTGGTTTTAGTATAACTAGCAGAGATGTTGTTACTAATGGGCCTAGTCCGATTAACAATATTGACGTGAGTGGACAAGAACAATCGAAAGTtgttgatattttgaaaaaagcaACGGGAATCGTTCACTTAATTGTTAATAGAGAAACTAAAGATCAAGAAACggatgaaaatgaagaagctATGGATAcaatatcaaatgattccggTATATCTGCACCCAAAGACGAGATTCTAATGATTACTATCCCTTTGAATAATCTTGGACCAGCTGGTCTGGGCATTAGCGTGAAAGGAAAAGCTTCCAGCGTTGAATCATGTGATCTTGGTATTTATATAAAGTCAATCATAAAAGGTGGCGCAGCTGCAAAGGACGGTCGGCTTAGGCCTGATGATCGCATTTTGAGGATCGAAGATGTCTCCTTAGAAGGAATGTCAAATGATAAAGCGATGGATACGATGAGAAATACAATGAAATCTGCAATAAAGAAAGGCGCTATGAGGATCATTGTCTCGAGGAAAGGAAGAAAAGAATCTCCTGCAACGAGTCTTACACGAAGTAAAGTCGAAAACAAGTGCCCACAACTCTTAAATTACCAAAATGAAAACCGGCGTGTTTCTGGCAAAGTAGTCTCCGTTAGTTCTGTTGAAATCCCCATTACACAACCATCTCGAACTGTTATTGTCGATAGAACACCAAGTATTGAGAAAAGAAGTGAAATTACACACAAAACGTCAATTTTTCCAACAGAGAAAGACTTATTCTTCCAGAAGAAGCCGTCACCGAGCGACCCTCCGTCATACGCAATCTTACCCCCGTCTTATGAGGAAACTATAGAAAGCCGATCGAACTCATTTTCGGATTCGAGCAGCAAGCCGTCCTTGAGCAAAAAGGAAGAATTCAGACTTAGTGATACGGATCTGTTGCGAACTATGTCAACAAGTTCAAGATTCTCCGTCGACTCGCTGATGATGAGTCCAGACGTGATGCCGTTTGAACGGGACGCGTTTGGGCGGCTTTCCATGTCGGAGAGAAAGGGCAGAGCCCATCTGGACGCGACGAAAAGTGACTTTTTCTCAAAGATGAAGAAATACAAAAGCATGGAAGATATTAGCTTCAACAAAGATCCTGAGATATCGTCaccaaagaaacttttcaacaatCAAACATCCGTCGATGATAATGACACAGATATCGTTCCACTACACGAAGCTGTGAGACGCACTGAATCACTTGATACTATGCTGAGCAATTCGAAAATGTCTTTAGGCCAAGGTGTAAACGAAGATTCTCAGTTTCAGAGGGGCACAGCGACCAGTAGTAGCACCCCGTGGTATGCCCAAAGGACAGTGTCGCCTACTGCATTAAAGCTTCGttCAAGAAGCACAGCTTGGAATGACAGCTTCAGAACAGCGGTTGACAGGACCCCCGTCTTTTATACCAAAGCAGCCAATAATGTTGAtggaaagaaacaagaagaCCTTGCACCAGATTCGACAATTCCTATAACATTAACAAGTAATGCAAATTACGATGCAAACCTCAAAGGCAAGAAAAAGCCTGGGTTCTTCAAAGGAATTGGCCAGCTCCTCAAGAAAGGGAAACAAAGACGGCCATCAGAAAGCAGAGATGAAAAGGATGGAAAAGTGGAATTCAGACAACAAGAACCGGCTGAAGAAAAGCTGATCGATTTTCCTCGCAAGCGGCGACCGCAGAGCTTGAACGAAGACACCATACGCTCTCAGCGAATGGAAGTAAATGTCGCGCGGGTTATAGAGCAAGAAAAACGCGAAAAAGAAGAACGACTGGCGATTTTACAGCGTGAACTGAAACAAATGGAAGAAACTGAGTTGAGAATCAACGGGACTTTAGATCTTCCTGGAACAGCGGATCTGCAACTGCAAGGAAAATCCGCGCCGGATCAGCGAGCTGCAAGACATTCAATGCCAAGTTATGGCATGACTTTCAAAATAGAGAACCGCAAGCAGAACGACCAAGAAAGGAGAGAGATAGAACAAGCCGCGCGGAACCCTCAAGAAAAGACTCAAGAAGTTTTCAAGTCTGTTCAAAAAGACCAGCGGCAAGTTCAGCAACATGATAACCGCACCGCTCTGAATcctacaacaacaaacaacccGACTGATGTTTCGTCCGCTACGGCAGCTAAAACAGGAGAATCTGGCGCGAAATCGCAACAACGATTCTTACCAACATCGCAACTATTTTACTACGGCCATAGCTCGCTACCTCGTAAATTTACAATGAATAACAAGCGAAAAACCAGCGCTGCTAATGAGAAGTCATCGGCATACAGTATCGAAGCTCAGACTGAAATATTCAGAAGAGCAAACTATAATAGAGATGAATTCGATGGACGAAATAGTAGTCGAAATATTCGAAAAAGTCCAACCGATGTTGATACAGCTTGTTTCATAAGACGTGAGCAAATTGTACAACATGTTGCAGTAGACTTGTGTTTAGGAGTTGAAGATCTGCTGCTGTGGAATGGATACCAGGAAAATGTCATATTGAATTCTACAcagtttgaaaaactttttccCAGTATTTTGTATTTACTAACCCCCATCCAGAATTTTGGTGCCGTGTGCAACAAATCGATTGCAAGGAGGGAAAAAAATCTAACAAGTGATCGCACTGCGTTCAAAGCCTTTTTGAAACAATATGGAGCCACGAACGTGCTTTCCGAGAAGAACATTGAAGCTATTCTTGAagatatcaacaaaacaatcAGTGATCGGTTGATAAAAAGccaTAACCAAAGATTAAGTATTGAAGGAGAACAGAAATCCTTGCCTCTGTTAATGCACTGTGTTACATTCATTTTGGTCCTTGCAGAGATGCCACCTATTTTTAAAGTTATTCAGAGAGAGATAAGAGAGTGTTTTGATGTCGAGGAAGCCCTGTCAGGCGCTGGTGTCCCTGAATCTGGGGCTGACAAAGTTGGCTTCAATTATCTCAGCAGCTTTATCGTCCTCCAACTTTTACATGGACACTGCATCGCTGAACATCATCATGCCACACAACACAACCCCAAACCAAAGGACTTTATTGATGCCATATTCAAAGAATATGCTAACAACGGGACGATATCGTCTGCGAAGTTCAAGGTCTTGTTAACCAAGCTGGGTATCGGTGGCACAGTTAGTGTTACAGTAACAGACAGCCATGCAGGACATAATCATCGAAAAAGCGAtcgactgatgatgatgatcacaacaATGAGCATCATAGAGAAAGGAGAAGTGCTACTGGCTCGTCCATATCTGGCAAGTCTGCTAAAAGTCCATTCTCTAAGCGAAAAGACTGGCGTAAATCAAGatcaatttagaaatatttGCCCTTCATTGATCCAACAAATCGAAAGTTCAGCGTGCAAGAATGAAACAACGGCAAAGGCAAAGAGCAAAGAAGAAGGCTGGAAACCATGGGTTTCCAGCATTGTCGCAGTGCTTCTAATCAGTCTTGGATCCTTGGTTGGAATTCTCGTGGCACCTTTCAGCGAAGGAAAGAATTTTACTATTGTGCTGACCTTCCTTATTGCAATCGCTGTATCCACACTTCTTGGGGATGCTTTGTTACATTTGTTCCCTCATCAAGAAACTCATCAACACGTTGGAAAAGCTCGATCACACAGCATTGTATCTGGTCCAATGGAAATTATACATGAAAGGCATGCTGAGCCAAACGAGcATAATAAAGACAGCCTCATCCGAACAGCGTCAGGGATACACAAATGCGATGAAACTGCTTGTATACAGATGGATGAAATCAAGGCAAAAGAGAAGAGTGCTTCGGAAGTTTATACAAACAAGGTCGTGTTCGAAAATGGAAACTCCAAAGGCAACCAGCATAAGAATGGTCATTCCCATGATGGACATTCCCATAATGGTGATTCCCTTGGCTATACTGTCAGTAAGCTACCAAAGCTGAAGAGCATCGTTTGGATGGTTCTGATTGGTGATTCTATTCATAATTTCCTCGATGGTGTTGCTATTGGTGTAGCATTCACAGACAAATTTCCAGTCGGTTTTTACGGTGGAATCAGCACATCCATTGCAATTCTGTGTCATGAGCTGCCTCATGAACTTGGTGATTTCGCCATCCTCATTCAGTCTGGGCTGTCGATCAAAGTTGCGTTGCTGCTTAACTTTGTATCGTCATTAACTGCAATTCTTGGAGCTTTGATTGGTGTTTCTCTTGGACAAGCAATGGATGCCAGCTCATGGATATTTGCAGTTACTGCTGGTCTCTTTGTTTACATTGCATTGGTTGACATGTTGCCTGAGTTGATCCACAGTGCTGAGCTTCGCCATTCTCCTGCTCATACAATGTTCTTCCAACACGCTGGATTGCTTATTGGATTCGCCATTATGCTTTGCCTTGCAATTTTTGAGGAAGAAATCAAGGTATAG

Transcript

evm.model.HiC_scaffold_16.97

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6L8F3	Zinc transporter ZIP6 OS=Danio rerio OX=7955 GN=slc39a6 PE=2 SV=1
Q504Y0	Zinc transporter ZIP12 OS=Homo sapiens OX=9606 GN=SLC39A12 PE=1 SV=3
Q99NH2	Partitioning defective 3 homolog OS=Mus musculus OX=10090 GN=Pard3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF21116 all species →	EF-hand_Zip	Zip protein EF-hand	Domain	Interproscan
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR049406 all species →	Domain	Zinc transporter ZIP4/12, EF-hand	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan
IPR003689 all species →	Family	Zinc/iron permease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14716	SLC39A10, ZIP10; solute carrier family 39 (zinc transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.