Gene detail

Detailed information of evm.model.HiC_scaffold_17.148 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_17:1714127...1725943
NR annotation: XP_012554237.1, major facilitator superfamily domain-containing protein 10 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_17.148

ATGGCAACTTCTACGATGATGCTTCGAGTGTTTGGAATCTTAGTTCTCGATTTGATTGCATTCACAGTCATCCTACCATTATTGCCAGCAATATTAGATCACTATGAAGTTACCTCAAAGGATGGAAAGGAAGACACCCTCTTGGATGCAACTTATAAAGTCATGAATTGGGTCAGGAAAATGATCAACATTCCAGATAATAAAAAATACAACAATGTTCTTATTGGTGGCATTCTGggttcattattttcatttttacaaTTTGTTGCCAATCCTCTCTTTGGATCTGTCTCAGATATTTTAGGACGGAGAAAAACAATGATCATATCCATGATTGGAACtgcattttcttatttcatttgGTTGAAGTCTGATTCATTCCAAGTTTTTCTTCTATCACGTGTTATTGGTGGGCTTTGTAAAGGGTCAGTGACTATAAGCACAACAATCATGACAGATATAACAAATAAGGAGAACAGAGCAAAGGGAATGGCTTTTATTGGAATTACATTTGGAATTGGGTTCACAGTTGGACCCTCACTTGGAGTTTATTTTGCAATGAATCCCAATGAAACTAACAATACACAACCTTTCCATGGGGCTGCCATGCTCTCATTAATATTACAACTAATTTCATTGATATTGGTTTTATTATTCTTAGATGAGACCAGGAAACCATCTGATCATGCCAGCCTTACTAAAAGCCTTTCATCAGCCATTGAGCTTGCTAATCCATGCCAACTTTTTAAAAGTTGTTTCATAAAATCATCCAGCACTTCTCTCGTCATCAAAGGACAACTTTCTATCATCcatttcttttatcttttattcttttctggACTTGAGTTTACATTAACTTTTCTAACTCATCAAAGACTCAACTTTAACAATAGAGAACAAGGAATGCTCTTTCTTTATATTGGATTGTTGATCATGCTCCTTCAAGGTGGATATGTTCGCAAAGTGAAGCatggaaaagaaagaaagctaGTATTATATGGTATTATATCAATGTTTCCTAGCATGCTGATTGTTTCTATAGCATTCTCAACTCCTCTATTATGCATTGgtcttttgttttattcatttgGGTGTGCAACTGTTGTTCCTTGTCTCACTGCATTGTTTTCATGTTATTCTGATCAAGATGAAACAGGACGACATGAGTTCAAAGATGGAGAGTATTTTATATCAATGTCAGTTGGACATGAAAGAATTCTAAAACTTGAAATTGAAGATGAATCAAATGGAAATAAATGGCTTGGCAAATTCGAAGCTGCATATATTGAAGAGCTGACTCACAAAACtggaaattttaaacaattcaaCATATTTTGCAGCATGTTAGAATCTGCATTGAAAAAGaCAAGTGAGTCTGTGATGCTAGATTTGATGACATATGCTGATCTAGAGTCTTTGAGATCACAAAAAGCTCATTCATCTCATCGTAAAGTGACCCACAATAACTCATCACAACTTAACAGCAAAAGATATCTTATCATGACTTATACAGTGGAATTTGACAGAATTCACTATCCACTGTCATTACAATATGTTGGAAAATCAGATGGAATTTCATTACGACAGAAGCTTAAGCATCAACAAGATGAAATAAAAGACCTAAAATCGCAGCTATTTGATGGGTTAGAGCAACGCATACACGCTAAAACTGTAACATTCGATGAAGCAGCGAACAATGGATGCAAAAGCGCTGCTACaatggtgaaaacaatagatgcaaGGCCTCTTTGCTGTTTAGTCACCAACGTCACACATGCAAACGACATCACGAGTAAGGAAACTAAGGCGAAaggcagaaatttcaaaatggatggTTCTAGAATATGttCGTCTCATTCACCTCAAGTGAAAATGCCCTTATATGTAAATAGATGGAAAAGGCAAGAAAACGGAAGAAGATCGGCTTCACAAGAAAAACAATCCCATAATGCTTCAGTAAAGACTAGAACACCCTCACCTTCAGGAAGCAGAAGATTCAACCCAACGGCCTATATCGAAGAGAAACAACGTCGGCAACGTGAAGCACAAGAAGCTAGAGGccGAACTAGATATTCCAGCTCTCGTAATAATTCTGGTCGTCGTTCTCGGTCTAATTCATATGGAAGATCGACACCTGACTTATCCTCTCACGTGGTTAAAAGACCCCCGTCTGCAAGAAGATCCTCTTCTGCAAAGGAGCTATATGGGCCTAAATTGAAACGAACATCATCAGTTGGAAGTTATGGAAGTAGACATTCATCTTTCGATAGTGGATCAGAAAGAAATCGCTCacgagaaagaagaagaaaaatatctCCTAGTCCTAACAGGGTAAAAAGTACAGGAAGCTTATCAAGAAAATCCTCCAGGAAATCTGTCCTTAGATCTGCATATAGTTCTGGTGGTTCTGAATTTGACGAGCTGGAACGACCAACTGAAAAGTCTTCGCGAAAGCAAAGCCGCAAAAATAGTAAAAGAAAATTACGCGATAACCAAGGacatgataataatgatgatgatgatgctgatgatcgTGGTAATACCTCGCTGGACATTGCCGATATTGATGCAAGATTGAATGCATTACAAAGCTTGCAATGTTCATTTGTGGATTCATCTTGGCATTCTCAGCTTTCTATATCTTCAGTCCAATGTTCATCAAAACGAAATATTGCTGCAGTAACCATGGAAACGAAGAAGTTGCTGGCACTTGTTCTATTGCAAACTCCTCTTGGAAATTATTTTACAAGcAATGCAACAGTTGGTGCACTCTTTGTAATAATGGCGATGATCTTTGCTTCACTTGCTAGTAAATTTGAAAAATCGTTGGTTATCATTGCAACATCAATGATTGGTTCTTACGTTGCTTTGACAGGTGTGGATATATTCTTAAAAAGTTCATTTTCATTCGCTGTTTTTGGATTTATCATTTACTTCAAAGAAATATTGCAAGCTGGGATACATTCAAGATGGCATATTGAAAGAGCCTCTCTTCCACATCTGCAATTGACCGTCACTTGGTTTGATAAAAGCAGTTTATCAATGCTATCTGCTTGGGTTGGGTTATCAGTGATTTCGTTTTTAATACAATACAAAATCACAGCTAAAGACATAGAAAATGGCGGATATGTTTGTCCTTTTGATTTTAAATCCTGCATTTGTGGTGGATGTTGTAAGAAAAAAGATGAATcgaatgaaaaacaacaacaagaaactGTTTACTTGTTTACGAATGGTGATGGATACACATTACatgaaaggaaaacaaaaacacGATGA

Transcript

evm.model.HiC_scaffold_17.148

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5M9	Major facilitator superfamily domain-containing protein 10 OS=Bos taurus OX=9913 GN=MFSD10 PE=2 SV=1
Q9D2V8	Major facilitator superfamily domain-containing protein 10 OS=Mus musculus OX=10090 GN=Mfsd10 PE=1 SV=1
Q14728	Major facilitator superfamily domain-containing protein 10 OS=Homo sapiens OX=9606 GN=MFSD10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13886 all species →	DUF4203	Domain of unknown function (DUF4203)	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR025256 all species →	Domain	Domain of unknown function DUF4203	Interproscan
IPR049733 all species →	Domain	Coiled-coil domain-containing protein 61, N-terminal head domain	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23504 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031526 all species →	Cellular Component	brush border membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_17.148.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.