Detailed information of evm.model.HiC_scaffold_1726.1 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_1726:627...3875
NR annotation: CAB4027358.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000062 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.HiC_scaffold_1726.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR053134
all species →		FamilyRNA-directed DNA polymerase homologInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24559
all species →		TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.HiC_scaffold_1726.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_1726.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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