Detailed information of evm.model.HiC_scaffold_18.165 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_18:1891918...1895096
NR annotation: RUS78808.1, hypothetical protein EGW08_013426 [Elysia chlorotica]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7M757Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus OX=10090 GN=Brcc3dc PE=2 SV=1
B2RYM5Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus OX=10116 GN=Brcc3 PE=2 SV=1
Q66GV6Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis OX=8355 GN=brcc3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005172 (this species only)
Ubiquitin familyUBD|Other|Jab_MPN · all ubiquitin genes in this species
Ubiquitin familyDUB|JAMM|JAMM · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18110
all species →		BRCC36_CBRCC36 C-terminal helical domainDomainInterproscan
PF01398
all species →		JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040749
all species →		DomainBRCC36, C-terminal helical domainInterproscan
IPR000555
all species →		DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR050242
all species →		FamilyJAMM/MPN+ metalloenzymes, peptidase M67AInterproscan
IPR037518
all species →		DomainMPN domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10410
all species →		EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008233
all species →		Molecular Functionpeptidase activityInterproscan
GO:0008237
all species →		Molecular Functionmetallopeptidase activityInterproscan
GO:0006302
all species →		Biological Processdouble-strand break repairInterproscan
GO:0031593
all species →		Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan
GO:0070531
all species →		Cellular ComponentBRCA1-A complexInterproscan
GO:0070552
all species →		Cellular ComponentBRISC complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_18.165.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP