Gene detail

Detailed information of evm.model.HiC_scaffold_180.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_180:13683...42466
NR annotation: XP_044182611.1, uncharacterized protein K02A2.6-like [Acropora millepora]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_180.2

ATGGGTTTTGACACCCTGAAAGTTCCTGCAAAGCTGCATGCCAAGAACAGAAGCAGACTTTGTGAGAGTCTAAAAAAGAACAGTCAGTACCAGAGTGGGTTATATGTTGTTCTACAAGGAGGTGAAGACCAGACAAGATACTGCAGTGATACCTCAATTGTGTTTCGCCAAGAGAGCTATTTCCATTGGACTTTTGGTGTAAAAGAACCTGATTGTTTTGGTGCTGTTGAGGTAGATACTGGCAAAGCGATCCTTTTTGTCCCAAGACTGGCTGCAGAATATGTTGTTTGGATGGGAAAAATTTATCCACCAGAATATTTCAAAAAGATTTACGAAGTTGATGAGGTTTACTTTGCAGACGAGATTGCAAAGGTTTTCGAAGGAAAAAAGCCTTCAATGCTCCTTACACTGCGTGGCCAGAATACAGACAGTGGGAAAATAACAAAAGAAGCTGCATTCGACGGAATCGGAAAcTTCAAAGTCAACAATGAGATCTTGTTTCCTGAGATAATGGAATGCCGTGTCATTAAAACTCCTGAAGAGCTGACAGTACTTCGTTATGCAAATAAAATCAGCAGTGAAGCACACAGAGAGATTATGAAAAGGATAAAACCCGGAATGAAGGAATATCAGCTTGAAAGcattttcaaTCATTATGTTTACGCAAGAGGAGGATGCAGACATACCTCGTACACATGCATTGCAGCCAgTGGAGATAACGCAGCTACTCTTCATTATGGTCATGCTGGTGCTCCAAATGATAAgactgttgatgatggtgatctaTGTTTGTTCGACATGGGTGGTGAATATTACTGTTACAGTTCTGATATCACTTGTTCTTTCCCTGCAAATGGAAAATTCACAGAAAACCAGAAGAAGATTTACAATGCTGTTTTAAAATCAAGCAGAGCTGTCATGGATGCAGTCAAACCAGGTGTTTCATGGCCTGATATGCATCGACTTGCCGATCGAGTTCATCTTGAAGAATTGAAAAGACATGGCATTTTGAAAGGAGATGTGGCTGATATGATGAAAGTGTACCTTGGTGCTATTTTCATGCCTCATGGTTTGGGACATTTTATGGGCCTAGATGTACATGATGTTGGTGGATATCCAAAGGGAGTCGAGCGGAGCGACAAGCCTGGACTTAGAAGTCTAAGAACTGGACGAACTTTGCATGAAGGAATGGTTTTGACTGTGGAGCCTGGAATTTATTTCATCCAAGCTGTTATCGACAGAGCACTGAACGATCCTGCCCATTCTTGCTTTATTGTCAGAGAAGAAATCGAGAAATTCAGAGGATTCGGAGGGAGTGATGCCTCTGCAGACAAAATAACAGTATCTGATGCCTCAAAATATGGAACTTCTGTTAACGGCAGGAAGGTTTTAtcaacaatttcattgaagcCACAGGATGAAGTATTATTTGGACAATGTCAGCATAAATTCAGATTGCTTCATAAGCCTTTTATTGTTGCAACGTCATGCATAAATAACAGCGAGAAGAAGGCAATGGTTAAATCATTGGCTAACAAACTTGGTGGTAGTGTTGTCAGCGAGTGGAAGTCGGAGTGCAATTATCTTGTTATGGAAGAAGTAACATTTACAGTAAAGACTGTCTCTGCCCTGGCAAAAGGATGTCCAATTGTTACTCCCAAGTTTCTTGAAGATTGTTTCAAATGTTGCCAACAGCCATCGCAACCCATGATCGAAACTAAAAGTTATTTTCCTAAACTTGTTGAGCCATCAttgaaaggaaaagaagaaCTTTTTCAACCAAATGAGCAAAGACAAAAACTTTTCGATGGCAAATGCTTTATATTCCTCTCCAGGAAACAAttcaaACGTCTGTCAACAGCTGTTAAAATGGCCGGTGGGATGGTAGACCTTTGCGACAATCAAGACGAAACTAAAGTGCCACAGATTCTATCAGATGACAGCCTCGTTCTTGCGCCGGAATTAAAAGACGAAAACGCAGCCTCGCCTGAACAGGCTCAGTGGATTAAATACATTATGGAACAATTGAGACTGGCTGATGTGAGATCAATAAAGGAATCTGAAGTTGGCTTGGCTATTTTGAATGTTTCTTTGGAAACATACTGCAATCCAATGTCTTCAACTGATACTTCTATAGCTGGAACAACAAGTTCACAATTAATGCAAGAAACGTTCGCTGACTTTACTTCACATTGGCATCCAACACACAAAGAAAAGCAACGCGACCACACCCGGCCTGCTGAAGCTATTGAATTCAAGAAACCCACAGTCCTTGCTCTTGACAGTCAGTTTGAtattgacaagaaaagGAAAAGATCATCGGAAACATCTATGTACATAACTGATACAATTCCCTTAGAAACTTCAATCCACGAGGCAAAgagacaaagaaaacaaacaatcGAGAATGATGAGACTTGTACAAATAGTTTCAAAGAAAAGGCCcagcaagaaaagagcaaaaatctCCAAGAAGAGAACACAAATTTCAAGGAAAAGAGTAAGGGTTTCCAAGCAAAATCGTCGATTACGAATAACATAGTTAAAGACACTCCTGTCAAAGTTTCTTATGATGCAGAGAGTGCAGCGAAAGCTAAGTCAGTTTTACCAGTTGTGGACatcaagaaagaagaaattgagGAAAGTGAACTTTTTAATGACGAGGATCCGTTTGTAttagatgatgaagaagaagaagacataaTGGTCGTCGATACAGAAACATCTGCGAATTTAGGCCGAAGTAAGAAGCATCGGTCTAACGAGACTGAAAGAAGCCGAGTTTCTGAAAGTCAGTTCACGGCAGATTTTGGAGTGAAGAAAAGCGATAAAGAGAGATCGGATAACTTAGGCCGAAGTGCGAAACATCATCCTAGTGAGACCGAAAAGAGCCGAGTTTCTGAAAGTCAGTTCACGGAAGATTATGAAGTAACGAAAGGCAATACACAAGCGTCGGCAAATTTCGGCAAAAAATCTAAGCATCAGCCTGTTGAGACCGAGAAAAGTCTAGTTTCCGAAAGTCAGTTTTCTGAAGATTTTGTTCTGACGAGAAGAAAACCGATTGAATCCGACGAAGTTAAATCCGAACCGAGAGACACTTATTTTCCGGCAGAGGAAAACGATGGATTTGAGTTTGAAGAAGCCACAGGATTGGTGGCAGTTGATTTGTGTGGGTTTCTGAATTCTAAAATGCAAAGGCCGAAAATTGAAAGAGACCCAGAAGAGGATTCAGAAATCCAAAATGCTGCAACTGTTGTCAAATACGCAGCATTGGTCACGAGGCCTACAGTGAAGAAGCCTTCTACTGTTCACCAGAACGGCAATGtgaaaaacttcaagaaattcaagaaagtttATCAAAATGGGCCTAGCCCTTCTACTAGCTCTACTCATGACCACACCGGAGCAAGTTCATCGTTCATATCGAATGTTCCTCTACCTCCCAGACTGAATCTATGTGGTAACCTTGCAGAGAATTGGAAACAGTGGCGACAGCTATGGAACGCGTATGAAACCGTCACAAATTTGATCTCTAAGCCTGATAATTTTCGAGTAGCTACATTCATCACTTGTATTGGCCCTGAAGCTCTCACCATACACAATGCACTTCCGTATCAGGATGACAGTGAACGTCAAAATATTGCCAAAATTCTCGATTTATGGAACACTTACTGTATTGGTGAAACTAATGTTATTTATGAACGATACAAATTCAACAACCGCAAGCAAGAGCCTACTGAATCCTTCGAAGCCTACGCTACCTCTTTGCGAGCCTTAGCTGCCACCTGTGCCTTTAGCACTCTCCGTGATGAATTGATCCGTGACAGAATAGTCTGTGGAATTCACAATAATGCAGTAAGACGAAAATTGCTACAAGAACCAAAGCTGACACTCTCAAAATGCATTGACTTATGCAGAGCTGCAGAAACCACTACTGCCCAAGCTAGGGCCATGGCAGGTCCTTCTGACAATGATTATCCTTTGGTACACTATGTTGGCAGACAAAAGAACACCAAGAGAGAAGATAACAGAGCTTTCATATcaaactgcaaattttgtggACAAAGTCATAAAAGAAACAAGGATTACTGTCCAGCCTATGGCCAAGTTTGCTCTAGCTGTGGCAAGAGAAAccactttaaagaaaaatgtaccACATCTAAATCTCAAGGTAAGAGAGATACCTTTTCTGCTAAAAAGATTCACACTGTAAGAGAAGAAACCCTCTCTAGTGATGAAgaaattcttattgttgaaATTTCTCCTGACAACAATTTAGAGATCAATGCCGTGTCCAAGGTTCCTcctaagaacaaaatttttgccacaATGATTGTTCATGACAAACAGGTCTCCTTCCAGCTTGACTCAGGTGCAACTTGTAATGTTCTCCCAGAACAATTTGTTCCTCCAGGCACCAATATTGAAAAATCCACTAACTCTCTACGCATGTACAGTACAGCCTTATTGCCTATAGCTGGTACTTGTCGGCTTAAATTGGTCAATCCAAAGAACAATAGTGAGTACACAGTCAGGTTTGTGGTTGTGCAGGGAGACTATATACCATTGTTAGGAGCTAATGCTGCCCAAAAGATGGGTCTTTTAACAGTCAATTATGATAATATCTCAGATAGCTCCAGTCGCTCTGTATCAAGAGGTCTACAATGTCCAGTCCAACAAGTTGATGCCACTGCCACTGTTATGACAGCCACCACTGATACTACAGTCACCATAGAGAACATAAAACATCAGTTTGGGTCTGTCTTTGAAGGACTTGGAAAAATGCCTGGCAAGCTACACTTAGACATTGATGAGTCACAGCCCCCTGTTGTTATGCCACCTCGTCGGGTACCTATTGCCCTCAAAGCTAAGCTCAAAGAGGAACTCAAGAGATTAGAGAACCTACAGGTCATAGAAAAGGTCACTGGTCCGACGGATTGGGTATCAAATCTGGTCATCGCAGAAAAACCCAATGGAAAACTCCGTGTCTGTATTGACCCACAACATCTGAACAAAGCTTTGAAGCGAAGTCACTATCCTCTACCATTGATAGATGATGTCTTGCCAGAATTAGAAGGCGTCAAAGTATTCagcaaaattgacttgaaagaaGGATATCTTCAAATCGAACTCGATGAAGAGTCAAGCATGCTCACAACATTTCAGACACCCTGGGGTCGTTGGAGGTACCTCCGGATGCCTTTCGGTATTAAACCGGCTTCTGAACACTTCCAGCGCAAATTTGACCAGTGTATTGAAGGACTATCCGGTGTACATGCAGTTGCGGATGATGCCCTCATCACTGGAAAAGGAGACACATACGAAGCTGCTGTTAGAAACCATGATGAGAATCTGCTTGCTCTCTTAAAGCGCTGCCAAGAGAAAAACATCAAGctcaacaaagaaaaattcaaattcaaatgcacAGAAGTCTCCTTCATTGGGCACATCCTAACCCAACATGGTTTGAAAATAGATCCAGCAAAGGTTGAAGCTATACAAAAGATGCAAGCACCAAGTGATGTAGCTGGTGTCCAAAGATTCATTGGCATGGTTAAATATCTTGCCAAGTTCCTACCAAAACTCTCAGAGGCCTGTGAACCTCTGCGAAGTCTTACTCATAAAGATACACCATGGCAGTGGGGCGAGTTACAAGCCAAGGCCTTTGCCGACATCAAAACTGCATTATGTGAGGCGCCTGTCCTCAAGTATTTTGATCCGAGGACACCCACAGAGGGACAAGGCGATGCCTCCTCAAAAGGCCTTGGCTTTGTTCTCATGCAAGAGGGTCGCCCAGTGTCTTATACAATTTACTGGCCTGGCATGAATAAAGATCTGACTGATTTTATATCCAAGTGTGACATTTGTAACACATTCCAAAGAAATCAGGCCAAGGaaccactcattccacgagaaATTCCAAGTCACCCATGGCAAATTATTGCCGCTGATATTCTCACATTCAACAACAAAGACTACCTCGTCACAGTGGATTGCTATTCAAATTACTTCGAGATAGATCGCCTCTTCCACAAAACTGCGGGAGAAATCAAGAAGAAGCTAAAGAGACACTTCTCTACTCACGGTATTCCAGAAAAACTTATGAGTGACAATGTgccatttgcttcaaaagaattcCAAGACTTCAGTAAGGAATACGAATTTATTACCGAACTTAGCTCTCCAGAATATCCCCAAAGTAACGGCAAGGCAGAGAATGCAGTCAAGACTGCCAAAATGCTTATGAAGAAAGCTGCCGAGTCTGGCACCGATTTTTATCTTGCGCTACTTGAATGGAGAAACACACCATCAGAGGGAATGGACAGCTCTCCATTTCAAAGAATCTTCAGCAGAAGAGCCAAAACCCTGCTTCCAATGTCCAAGAAACTCCTGAAACCAGAAATTGTACCTGAAGTTCAAGACAATCTTCACAAAGGAAACAGTTGCAGGCAAAGTATTTCAACAGAGGTGAATATCCGATCATACAACGTGAAAACAGAAGATGGCAGAATCTTAAGGCGAAATCGAAAGTTCTTACGCCACACTAATGAGCcctttaatgatgttgatgaagatgattcatTCCCAGACCCAACAACGGAACAGGAAGCAATATCTCAACCAACTCAAGAAGTATCGTTTCAACCTAACCAAGAAGAGCACCGCCCTCAAACAGCTGTACAGAAGCAATCGGAACCTCAGTCAGAACCCGTTGACTCAGATGAAACCAGATTTGATCACAGGCAATTACAATTCTATAAACCTACTGTCACCAGAAGTGTAAGCCCCTCTGgaaaaagcccccccccctcgaagAAGCCCCAAGCCCACAATAATGTTTGCgaaataagcccccaggggcttattcgaggccTTATGGCCTATTATCCTGGCAAGCACCTTTCAATTCCGAATATAATTGGCGGACGTGATCTCGTGGTATATCAGAGTGAAGATGAAAACAGGGAGCATGTCTTTGCTGAGATTCGAGCGgtgaatgaagaagaagaacgacGAGAAAAATACATCGACGACCTGTTCAAGTTAGTACTTTGTTGTTAG

Transcript

evm.model.HiC_scaffold_180.2

Protein

evm.model.HiC_scaffold_180.2

MGFDTLKVPAKLHAKNRSRLCESLKKNSQYQSGLYVVLQGGEDQTRYCSDTSIVFRQESYFHWTFGVKEPDCFGAVEVDTGKAILFVPRLAAEYVVWMGKIYPPEYFKKIYEVDEVYFADEIAKVFEGKKPSMLLTLRGQNTDSGKITKEAAFDGIGNFKVNNEILFPEIMECRVIKTPEELTVLRYANKISSEAHREIMKRIKPGMKEYQLESIFNHYVYARGGCRHTSYTCIAASGDNAATLHYGHAGAPNDKTVDDGDLCLFDMGGEYYCYSSDITCSFPANGKFTENQKKIYNAVLKSSRAVMDAVKPGVSWPDMHRLADRVHLEELKRHGILKGDVADMMKVYLGAIFMPHGLGHFMGLDVHDVGGYPKGVERSDKPGLRSLRTGRTLHEGMVLTVEPGIYFIQAVIDRALNDPAHSCFIVREEIEKFRGFGGSDASADKITVSDASKYGTSVNGRKVLSTISLKPQDEVLFGQCQHKFRLLHKPFIVATSCINNSEKKAMVKSLANKLGGSVVSEWKSECNYLVMEEVTFTVKTVSALAKGCPIVTPKFLEDCFKCCQQPSQPMIETKSYFPKLVEPSLKGKEELFQPNEQRQKLFDGKCFIFLSRKQFKRLSTAVKMAGGMVDLCDNQDETKVPQILSDDSLVLAPELKDENAASPEQAQWIKYIMEQLRLADVRSIKESEVGLAILNVSLETYCNPMSSTDTSIAGTTSSQLMQETFADFTSHWHPTHKEKQRDHTRPAEAIEFKKPTVLALDSQFDIDKKRKRSSETSMYITDTIPLETSIHEAKRQRKQTIENDETCTNSFKEKAQQEKSKNLQEENTNFKEKSKGFQAKSSITNNIVKDTPVKVSYDAESAAKAKSVLPVVDIKKEEIEESELFNDEDPFVLDDEEEEDIMVVDTETSANLGRSKKHRSNETERSRVSESQFTADFGVKKSDKERSDNLGRSAKHHPSETEKSRVSESQFTEDYEVTKGNTQASANFGKKSKHQPVETEKSLVSESQFSEDFVLTRRKPIESDEVKSEPRDTYFPAEENDGFEFEEATGLVAVDLCGFLNSKMQRPKIERDPEEDSEIQNAATVVKYAALVTRPTVKKPSTVHQNGNVKNFKKFKKVYQNGPSPSTSSTHDHTGASSSFISNVPLPPRLNLCGNLAENWKQWRQLWNAYETVTNLISKPDNFRVATFITCIGPEALTIHNALPYQDDSERQNIAKILDLWNTYCIGETNVIYERYKFNNRKQEPTESFEAYATSLRALAATCAFSTLRDELIRDRIVCGIHNNAVRRKLLQEPKLTLSKCIDLCRAAETTTAQARAMAGPSDNDYPLVHYVGRQKNTKREDNRAFISNCKFCGQSHKRNKDYCPAYGQVCSSCGKRNHFKEKCTTSKSQGKRDTFSAKKIHTVREETLSSDEEILIVEISPDNNLEINAVSKVPPKNKIFATMIVHDKQVSFQLDSGATCNVLPEQFVPPGTNIEKSTNSLRMYSTALLPIAGTCRLKLVNPKNNSEYTVRFVVVQGDYIPLLGANAAQKMGLLTVNYDNISDSSSRSVSRGLQCPVQQVDATATVMTATTDTTVTIENIKHQFGSVFEGLGKMPGKLHLDIDESQPPVVMPPRRVPIALKAKLKEELKRLENLQVIEKVTGPTDWVSNLVIAEKPNGKLRVCIDPQHLNKALKRSHYPLPLIDDVLPELEGVKVFSKIDLKEGYLQIELDEESSMLTTFQTPWGRWRYLRMPFGIKPASEHFQRKFDQCIEGLSGVHAVADDALITGKGDTYEAAVRNHDENLLALLKRCQEKNIKLNKEKFKFKCTEVSFIGHILTQHGLKIDPAKVEAIQKMQAPSDVAGVQRFIGMVKYLAKFLPKLSEACEPLRSLTHKDTPWQWGELQAKAFADIKTALCEAPVLKYFDPRTPTEGQGDASSKGLGFVLMQEGRPVSYTIYWPGMNKDLTDFISKCDICNTFQRNQAKEPLIPREIPSHPWQIIAADILTFNNKDYLVTVDCYSNYFEIDRLFHKTAGEIKKKLKRHFSTHGIPEKLMSDNVPFASKEFQDFSKEYEFITELSSPEYPQSNGKAENAVKTAKMLMKKAAESGTDFYLALLEWRNTPSEGMDSSPFQRIFSRRAKTLLPMSKKLLKPEIVPEVQDNLHKGNSCRQSISTEVNIRSYNVKTEDGRILRRNRKFLRHTNEPFNDVDEDDSFPDPTTEQEAISQPTQEVSFQPNQEEHRPQTAVQKQSEPQSEPVDSDETRFDHRQLQFYKPTVTRSVSPSGKSPPPSKKPQAHNNVCEISPQGLIRGLMAYYPGKHLSIPNIIGGRDLVVYQSEDENREHVFAEIRAVNEEEERREKYIDDLFKLVLCC

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0D7	Xaa-Pro dipeptidase OS=Rattus norvegicus OX=10116 GN=Pepd PE=2 SV=1
P12955	Xaa-Pro dipeptidase OS=Homo sapiens OX=9606 GN=PEPD PE=1 SV=3
Q11136	Xaa-Pro dipeptidase OS=Mus musculus OX=10090 GN=Pepd PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003639 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF05195 all species →	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF16508 all species →	NIBRIN_BRCT_II	Second BRCT domain on Nijmegen syndrome breakage protein	Domain	Interproscan
PF17919 all species →	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF08599 all species →	Nbs1_C	DNA damage repair protein Nbs1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043014 all species →	Homologous_superfamily	Nibrin, second BRCT domain superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR007865 all species →	Domain	Aminopeptidase P, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR032429 all species →	Domain	Nibrin, second BRCT domain	Interproscan
IPR041577 all species →	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR013908 all species →	Domain	Nibrin, C-terminal	Interproscan
IPR052433 all species →	Family	Eukaryotic-type Prolidase	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48392 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03515	REV1; DNA repair protein REV1	EC:2.7.7.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.