Gene detail

Detailed information of evm.model.HiC_scaffold_197.18 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_197:289726...303452
NR annotation: XP_012555367.2, leucine-rich repeat serine/threonine-protein kinase 1 [Hydra vulgaris]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_197.18

ATGGATCAAAATGAAGAGTTGATAGTAAAACTGCATCGTTTATGCGAGCGCGGAAATATAGAATCTTTAGAAAATTATTTCTCAAACACAAGAGATGCATCTTTATATATCCATCAATGCGTTGGTGTCTTTGGTTATACAGCCCTTCATCAAGCAGCTAGTTGCAGAAATGCCCAGGCATTGCGTTATTTGTTATTTAACAGTGTCCAAGTGAATGCATTATCTAATGGCAAATATACCCCTTTGCACATTGCAGCATCAATTGGAGACATTGAATGCATTAAAATTCTTTTGGAATTTGGTGCTAATGTTTTTTGTTTGGATGAATTTGGTAAAACACCATTTGCTGCTGCCAAACTGAGCAAAAggaaaaatgcagcaaaaattCTCAAATCAGCTGaaataaagaaatattctGAAATTGGGGATGCCAGTGCATTGTATGATGAATTAAGAATTCTTAAAATTGGcaaagatattgaaaagaacTGCCTTGAAGAGGCACTTGAGATAGCTGTTTCACAGAATAATTTCAAATGTGCTGGTTTACTTTTCAAACATGGAGCAAGGAGCACAAAGGAGGTCTTACAAGACTCACTATTAAAATCAAATCTTTACAAGACAGCGGTTGTGCTGTTATTATGTCATGCAGCAAAAGTTGGAGACAATGATATGATTTGGCATATTTGTAATGGACTGAAAAATGATGATTCAAATCATTTTGATACCGGACTTGATGGAGTGGATGGGAATGCTTGTGTTCTAAGAAGGGAATATCTGCCACAACAATGGGATAAGACACTGACTCAAGAAAGGCTCTACAGTTTAAGAAAAGCAACTGCTTCAGTTGAAAAAGAATATTTGCATAGTCAGTTATTGGCTATTGCCTTAGAACATGGATCCCAAAAAGTTGTTGGAATCATTCTTCTTGAATTTTACTTTGATCAGCAATGTCATACAGCAAACTGGTGTGGATTAGCCCTCACAGATATACTCCCTGAATGGATTGCAGAATTAAGCAACTGTGAAAAGCTTTTGATATCTAGAAATAAATTGAATCATATTCCCCGTAACCTTGCAACTACAAGGAACCTTACCGATCTTACTCTTGCATATAATTCAATCACTCGTATTCCAAATGAAATTTTCGGGATGCCTCTTCTAGTGCATctaagtttgtcaaacaacaaAATCGGAAATTTGCAACATGTTAAGAGATGGAGTAGGTCAATAAAGATACTGGATTTAAGTGGAAACAAGCTTAAAAGAGTTCCCGAATCTATCAGCCAATCTGCATTTGAGAAACTGAATCTTTCCGATAATAACCTGTCTGAAGTTCAACAATGCATTTGTTGCATAAGAACGCTGAGAGTCTTAGATATTGGGAGTAACAGAAATATCAAAATTCTTCCTCCAGAGCTTGCAAAACTTAAGCGTTTGAATAAGCTAGGAATGATGAACTTAGACAAGGTCAAAGACCCACCTCAGAAGTTTCTTAGTTCTGTGGAAGGTACCTTGGATTATCTTAGAGCTAAACTTCGCAAACCTACACCTAACTACACAATGAGACTAATGATTTTAGGTGAAAGAAGTAAAGGCAAAACATCTTTAATGAACAGACTTGACATGTATTACTCATTTAATGGGGAACCATCCTCTCAAGGCGTCGGTGTAAAAAGCATTACAATTGGAAAGAAACCTCCATTCGTTTTTAAATGCATGGACTTCAATGGAGAAACAGATTATCTTACTTTGCATCAGTGCTTTGTGTCACCGAATTCATTATACCTGTTGGTTTGGGATGTCACTGATGGTGAAGATGGAATAAATGCTATGAAACCATGGTTGAACATTCTTGAGATAAGAGTGCCAAATTCAAATGTGATAATTGTTGGAACACATTTAGATATGGTCAGTGAAGATGAGATGCAAAATGGTTTTGAGGCAAGAATGAACGACAAAGTGTCCGATCTAAAATTAACACGGTGGAAATGGAGAAAACGTCATGAAGTTCCTGACAATGGTATCTTGATGGTGACTTGCGATTCAGAGAACAAATTGTGCAAAGCATCCATTGAAAAACTGCGGCAAGTTATATACTCATTTGCAGAGAAAATGACTGTTCCTGATTTTGCACGTAACATGACTCGTGTTGGTATCGGAAGAGATGCGATGAAACAGTCAGAACAGCATATAATGGGAGCTAAATTTCCTTCAAGCTACTTATCATTAGCTGATGCAATGGAAAGACGCCGAGTTGAATTACTTGCAAATGGCAAGGTCCCTGTATTGAAAAAGCAAGAATATGACGAAGTTATCAGAGAAACTGCTCAAAAAACTGGAGATATTTTTTATCCTGATGATAATGCCACAATATTTCTCAATACCATCGGTTCCATTGAACATTACCGTGATTCAAATGGGTACTTGAAAAGTCTATACTTTCTGGATCCCTCATGGTTGTATGATCTGATGGTAAAGATTATCGCTTTTGCTGGAAGGACTTGCTACTCCCACAGAACAGACTTGGTCTTCCGTAAAGATATTGAATTGATGCTAACGAAGACGGAAAAGGGCATGTCACGGGAGTTTTTTCCGCCACTTTTTGAGCTTCTTAAACGATTCCAGATCGTGTTCTTTGTTGATAAGGACAGGCTTCTGATACCCTCATTGCTACAATCAGATTCAGTCAGTGATAAAACAAGGCCATTAGAACCAGAAAGGGTGTTGATAAGGCGACATGAATTCTCGTCATTTCCTCCTTGCTTCTGGGGCCGATTTATCAGCAGATTTTTGCACTTCTTGAAAGATCTATTACGAGGTGTTGGTTTACATGCTCAGCCAGATATACAAGGCCAAAGAAGCAATGCAGGTGAAGTGTTTAATGAGCCAACTGATATTTCATACCTGCTTGGTTCTGGTAGATTGCATTTGAACAAAGAGAGTATGATCATCATTCATCCAAgtctttttttatcaatttgcaTTGTCAACTCTGCCGATAACAGAACTGTACTTGAGACAAAAGTATCAAGAAACTCCCTTGGCTTTCGTGTGTTATGCTATATTGTTGACAATGTACATACTGTTATAAATGAATGGTACCCTGCACTTGCTTTTAATGATGGGCTTGTGTCAAATGCCGTATGCCCAAGTTATAATGATGAAAGAATTGAAATGTCTTATGCATTTGATGTGAGAGATTATATTCTACACTCATTGGTGCAAGATTACATTATCTGTCAGAATGGATACGTGGTGAGGCTTCAGGAATTATGCCCTGATGTAATGTTTATGGATGTTCCACCTGAACTTCACTTAAACCCATATTATCTTGATTATAACGCGGCACTATGTGATTCAAGATATTATCAACATTCAGTCATTGGAAATTATGGAGAAACACCAGTTGCTGTTAAGTTATGGAGACCAGTCACAGAAATGGGGCCAGAAATTGCAGATTACTTTTACAGTATGCGACGTGAAATTATTGTCACGAGTAAAATTGACCATCCAAACATCATTGAGTTCATTGGCATTGCCCTTCGTCCAAGGCTATGTTTGGTGACAGAATATGCAAGTCAGGGAGATCTGAGACGTTTTATAGAAGAGGAGATTGACCAAGTTGAGCGTATTGTGATTTACCGAATTTCCCAGCAAATAGCAAGTGCCTTGTCTTATTTGCATAAACTTGGTATTGTCCATCGGGATGTGAAGTCTTACAATGTGTTAATTTTTTCTACAGAATTAGCAGCTGAAGTTAATGTAAAATTAGCCGATTTTGGAGCAGCAGAGTTTTTATCGCAAAGTGGCTTGAATCATTTAACTGGTACACCTGCATTCATGGCGCCTGAAGTTGGAAACAAAGAATCAAAACTAGGGTACAATGCTAAAGTTGACGTTTTTTCCTTTGCTATGGTGCTATATGAATGCACCACAAAACGGTTCCCTTTCGAAAACATGTCTTACTGGAATCTTTCCGAACTTATCCAGGAAGGAAAACGTCCTCATTTTTATGATGTGGAATCGACAAGATTTGGATTCCTAACTCTAACTGAGCTGATGCTGAAGGCCTGGGAACAAGAGCCAATGAAGCGTCCAACATCACATGAAGTACTTCATCAGTTGAACACACCATGCTTTTGCCTTCTCTATGGCAAACAGCATTTTCAGCGAGTATACAAACCACATGAATTGTTCTTTCTGCAAGATAAACAAGAGTTATGGCAATGTTCTTACGACATCGCTAGTGCTGCAATAATTGTGATGGATATGACAAATGCAACTATTAAGACACGCATCAATCCCGTGCTACAATACATGAATGTCAATTTCTATACTCAGTCTATTCATTTGATTGATGCAAACCACGTAGCCATGATTTTGAATACTACAGGCAATGATTACGTTGCCTTCTATTCTACCATGGATTACAGTTTCCTTGGTTGTCACGAGTTTAATgaaggcattcacatcacatcATTGTCTGTCACTCAACAATATGTATTCATTGGCATGGATGGTGGTTATTTGCTCAAAGTTCAAAAAGGTGACTTCGTCATTGGTCAATTCACAGGCAGACTAATTTTAATTGAGGATGGACATTCTATTTCTGTGATTACAGCATTTGAATCACATCTATTTGTCAGCTGTGATGAGAATGTATATGAATACATACTGAATTCAGAAGATGCGGATGGAATGGAAATGACTGCAGAAATATCACTCACTGAGTCTGTATCAAATATGATCATTTCACCTGATGGCCTTCTGCTCTTTATATCATTCCAAGACAGCCCTGTTGTAGCTTGCTACTTGATTGAAACCATGAAAGCACTGGGGAACATCAGCTGCTCCGACCTCATTCGTGTTGTTTTCCCTCATAGAAATCCACATGATGAGCGAGTAACCAGTTTATGCGTTCATGCTGAGACGCTTTGGGTTGGAACTGGCACCGGCCATGTTCTTATATACGAGATAAGCACTGCAACAGCGCCAAAATTCATCACTTGGTTACATCCATATAAATCTGAAGTGTCCTGCATGACCGTTTGCAATTCAGTTGGGCCTAAGTTGGCCAACTTTGTTGTTACTTTTGGTAAAAATGCTAATCCGAAATGCTACAGCAATAATTTGGAAGGGATTTGTGAGCTGACTGAATTTTTCCCAGTTGATGAATCAGAGGAAAGCAAACCTTTTCAGCGAGGAATCGATTTAAAAACTGAATATTTGGCATTGATATGGGATGCAGTCAGAGCAAATGTTTTGAGAAAGATTTCTTATCCAAATTAA

Transcript

evm.model.HiC_scaffold_197.18

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q8RWL6	Serine/threonine-protein kinase STY17 OS=Arabidopsis thaliana OX=3702 GN=STY17 PE=1 SV=1
Q2MHE4	Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001655 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050647 all species →	Family	Plant LRR receptor-like serine/threonine-protein kinases	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48056 all species →	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_197.18.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.