Gene detail

Detailed information of evm.model.HiC_scaffold_198.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_198:1314...11300
NR annotation: XP_028409574.1, leucine-rich repeat serine/threonine-protein kinase 2-like [Dendronephthya gigantea]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_198.2

ATGATTTGGCATATTTGTAATGGACTGAAAAATGATGATTCAAATCATTTTGATACCGGACTTGATGGAGTGGATGGGAATGCTTGTGTTCTAAGAAGGGAATATCTGCCACAACAATGGGATAAGACACTGACTCAAGAAAGGCTCTACAGTTTAAGAAAAGCAGCTGCTTCAGTTGAAAAAGAATATTTGCATAGTCAGTTATTGGCTATTGCCTTACAACATGGATCCCAAAAAGTTGTTGGAATCATTCTTCTTGAATTTTACTTTGATCAGCAATGTCATACATCAAACTGGTGTGGATTAGCCCTCACAGATATACTCCCTGAATGGATTGCAGAATTAAGCAACTGTGAAAAGCTTTTGATATCTAGAAATAAATTGAATCATATTCCCTGTAACCTTGCAACTACAAGGAACCTTACCGATCTTACTCTTGCATATAATTCAATCACTCGTATTCCAAATGAAATTTTCAGGATGCCTCTTCTAGTGCATctaagtttgtcaaacaacaaAATCGGAAATTTGCAACATGTCATGAGATGGAGTAGGTCAATAAAGATACTGGATTTAAGTGGAAACAAGCTTAAAAGAGTTCCCGAATCTATCAGCCAATCTGCATTTAAGAAACTGAACCTTTCCGATAATAACCTGTCTGAAGTTCAACAATGCATTTGTTGCATTAAAACGCTGAGAGTCTTAGATATTGGGAGTAACAGAAATATCAAAATTCTTCCTCCAGAGCTTGCAAAACTCAAACTTTTGAACTATCTTGGAATGAAGAACTTAGACAAGGTCAAAGACCCACCTCAGAAGTTTCTTAGTTCTGTGGAAGGTACCTTGGATTATCTTAGAGCTAAACTTCGCAAACCTACACCTAACTACACAATGAGACTAATGATTTTAGGTGAAAGAAGTAAAGGCAAAACATCTTTAATGAACAGACTTGACATGGATTACTCATTTAATGGGGAACCAGCCTCCCAAGGCGTCAGTGTGAGAAGCATTACAATTGGAAAGAAACCTCCATTCGTTTTTAATTGCATGGACTTCAATGGAGAAACAGATTATCATACTTTACATCAGTGCTTTTTGTCACCGAATTCATTATACCTGTTGGTTTGGAATGTCGCTGATGGTGAAGAGGGAATAGATGCTATGGAACCATGGTTGGACATTCTCAACACAAGAGTGCCAAATTCAACTGTGATAATTGTGGGAACACATTTAGATATGGTCAGTGAAGATGAGATGCAAAATGGGTTTGAGGCAAGAATGAATGACAAAGTGTACGATCGAAGATTAACATGGTTGAAATGGAGAAAACGTTATGAAGTTCCTGACAATGGTATCTTGATGGTGACGTGCGATTCAGAAAACAAATTGTGCAAAGCATCCATTGAAGAACTACGGCAAGTTATATACTCATTTGCAGAGAAGATGACTGTTCCTGATTTTGCGCGTAACATGACTCGTGTTAGTATCGACAGAGATACGATGAAACAGTCAGAACAGCATATAATGGGAGCTAAATTTCCTTCAAGCTACTCATCATTAGCTGATGCAATGAAAAGGCGCCGAGTTGAATTACTTGCAAATAACAAGGTCCCTGTATTGAAAAAGCAAGAATACGATGAAATTATCAGAGAAACTGCTCAAAAAACTGGGGATATCTTTTATCCCGATGATAATGCCACAAAATTTCTCAATACCATCGGTTCCATTGAACATTACCGTGATTCAAATGGGTACTTGAAAAGTCTATACTTTCTGGATCCCTCATGGTTGTATGATCTGATGGTAAAGATTATCGCTTTTGCTGGAAGGACTTGCTACTCCCACAGAACAGACTTGGTCTTCCGTAAAGATATTGAATTGATGCTAACGAAGACGGAAAAGGGCATGTCACGGGAGTTTTTTCCGCCACTTTTTGAGCTTCTTAAACGATTCCAGATCGTGTTCTTTGTTGATAAGGACAGGCTTCTGATACCCTCATTGCTACAATCAGATTCAGTCAGTGATGAAACAAGGTCATTAGAACCAGAAAGGGTGTTGATAAGGCGACATGAATTCTCGTCATTTCCTCCTTGCTTCTGGGGCCGATTTATCAGCAGATTTTTGCACTTCTTGAAAGATCTATTACAAGGTGTTGGTTTACATGCTCAGCCAGATATACAAGGCCAAAGAAGCAATGCAGGTGAAGTGTTTAATGAGCCAACTGATATTTCATACCTGCTTGGTTCTGGTAGATTGCATTTGAACAAAGAGAGTATGATCATCATTCATCCAAGTCTTTTCTTGTCGGTTTGCATTGTCGAATCTGCCGATAACAGAACTGTACTTGAGACAAAAGTATCAAGGAACTCCCTTGGCTTTCTTGGGCTATGTTATGCTGTTGATGTTGTGCATACCTTAATACACGAATGGTACCCTGAACTTGCTTCATATGATATTTTTGATAGGCCAGATACCCTTTACCATGCTGTGTGTCCAAGTTGCATTGATGACAGAATTGAAAGGCCTTGTGTGTTTGGTGTGAGAGAGTATATTCTACAATCATTGGTGCAAGATTACATTGTCTGTCAGAATGGATACGTGGAGAGTTTTCAGGAATTATGCCCTGATGTAATGTTTATGGATGTTCCACCTGAACTTCACTTAAACCCATATAATCTTGATTATAACGCGGCACTATGTGATTCAAGATATTATCAACATTCAGTCATTGGAAATTATGGAGAAACACCAGTTGCTGTTAGGTTATGGAGACCAGACACAGAAATTGGGCCAGAAATTGAAGATGACTTTTACAGTATGCGACGTGAAATTATTGTCACGAGTAAAATTGACCATCCAAACATCATTGAGTTCATTGGCATTGCCCTTCGTCCAAGGCTATGTTTGGTGACAGAATATGCAAGTCAGGGAGATCTGAGACGTTTTATAAAAGAGGAGATTGACCAAGTTGAGCGTATTGTGATTTACCGAATTTCCAGCAAATAG

Transcript

evm.model.HiC_scaffold_198.2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UHC2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Mus musculus OX=10090 GN=Lrrk1 PE=1 SV=1
Q38SD2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=LRRK1 PE=1 SV=3
A4IIK1	Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis OX=8364 GN=mfhas1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001655 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050715 all species →	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752 all species →	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_198.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.