Gene detail

Detailed information of evm.model.HiC_scaffold_199.2 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_199:6654...8013
NR annotation: CAH3146084.1, unnamed protein product [Pocillopora meandrina]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRX2	Large ribosomal subunit protein bL17m OS=Homo sapiens OX=9606 GN=MRPL17 PE=1 SV=1
Q5RCA3	Large ribosomal subunit protein bL17m OS=Pongo abelii OX=9601 GN=MRPL17 PE=2 SV=1
Q3T0L3	Large ribosomal subunit protein bL17m OS=Bos taurus OX=9913 GN=MRPL17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01196 all species →	Ribosomal_L17	Ribosomal protein L17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036373 all species →	Homologous_superfamily	Large ribosomal subunit protein bL17 superfamily	Interproscan
IPR000456 all species →	Family	Large ribosomal subunit protein bL17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14413 all species →	RIBOSOMAL PROTEIN L17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02879	RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.