Gene detail

Detailed information of evm.model.HiC_scaffold_2.1 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:939...62027
NR annotation: XP_002167620.1, calpain-9 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.1

ATGGAGGAATATCTTCGTACAGAGCAGGAGAAACCTTCTGCTGCGAAGAAAAGATGGAAAATATTGTCGGAAAGCTTGCTAAAACATAAAATCGGGGGGTTGAATGCGGCCGGTGAAACGAATGTTTCTGTCAGacgttttcaaggtttcgagATATTCTTCTACAATAAGATTGAGACTGATAACTTGGGTACTTGGTTCAGTGTTGGTTGCAAAAGTTTAAAAACTATACAAATAAGGCTACTGCAAGGTAGAGTGGATCCAGAGGTTCTAATTGGTTTCAATAACACTGGGAATGTTTGTATATGGCCAGCAGAAGAGGTAATGACTCGCTACTGCATGAAATTCTCTAATAATTTCAGTGGAAAAAGAATTTGTGAAATTGGAGGTGGCATGACATCACTTGCTGGACTAGCTtccaaaaacgtaaaaataagtACAGAACGACTGACTCCACTTTTCTGTGGTTTAGAGTTTGGGGAATCCACTGCTGACGGTCGCACTGACTACCAATACATGCTACTATCaagaagggattgggttgcaatcaGCCGAAAGTTGCCACATCTGAGGGCCCTGAAAGCGTTGGAGAACTGGGAACTAGGTTCTCGGTACTTGGCGGTAATTCTGCGCTGCGGTACCTGGCAACTGCTGACGTCAGTTCCAATAGGCAAAATGGCTTCCTGTCGATATAGCTCAATAGAGAAAATGACGTCATATTATCAATATTCCACGAGTTACAATACTCCAACTGGAAGCGTCCGGCGCTCTTCGACCTCACATACATCATACAGCAGTGGAGGACCGGGCTCCGGTTACCAAAATAATTACTCCTCGTCGTCTTATAGCAGCAGTTATTCTTCATCAAAAAACAACCGGGTCAATGATATCAAAAGCAACGGTTTGATAAGCGAATTTTCCGGCTCCGGCAGTGACATTTTCAAAGCTATTACTGATTCGGACAATGCAAAAGGCTTTAAAAAACAGGACTATAACAAACTGAAAGAACAATGCCGTCAGTCTGGAAAGCTGTTTGAGGATCCGCTGTTCCTAGCAGACGACCGGAGCTTGTTCTACAGCCAACGGTCGCCGAGAAAGTTCGTTTGGAAACGACCAGGGGAGCTTGTCAGTGATCCACAAATGTTTGTTGGTGGAGCGAGCAGATTCGATGTTTCGCAAGGCATGCTGGGAGATTGCTGGTTCCTTGCTGCGATTGGTGCATTGACGCAAGAAGAACAAATGATGGGCAAAGTTGTTCCGGAAAACCAGTCATTCGATCAGGATTACCAAGGGATATTCCGGTTCAAATTTTGGCAATACGGTGAATGGAGAGAAGTGGTTGTTGATGACCGCTTACCCACGTATAATAACCAACTCGTGTTCAcgcattcaaagaaaacaaatgagTTTTGGTCAGCTTTGCTTGAAAAGGCCTACGCCAAGTTGAACGGTTCCTATGAGGCACTGAAAGGAGGCCAGAGTAGCGAGGCTCTTGAGGATTTCACGGGGGGACTCTGCCTCACTGTGCCATTGGACAAAGCACCGAAGAATCTCGCTAATTTGATGATGCGTGCCTCCCGGTTCAAGTCACTGATGTGCGCAGCTATTGATGCGAAAAATGCCGCAGAAGTTGAAGCTAAGCTAAGCAACGGTTTAGTCAAAGGACATGCGTACACGATTTCAAGCACAGCCCGTGTAAGTACGATTAGGCCATGGGCTGGCGCACAACCCGTCCGCGTGGATTTGGTCCGGGTCAGGAATCCTTGGGGAAACGAAAGAGAATGGAATGGGCCTTGGAGTGACAGCTCACCGGAATGGCAGTTGTTGTCAGAAAAGGACAAGAGGGGCATGGGCCTAACATTTGATCACGACGGAGAATTTTGGATTTCGGTTCAGGATTTCATAGCAAACTTCACGAAACTGGAAATTTGTATGCTGAGTCCTGATAATTGCGGACACGTCGAGGGGCATCAATGGCAAATGCTGGTACACGAAGGAGAGTGGCAGCCATTTGTATCTGCAGGAGGATGCAGAAATTATCCTGATACCTTCCATACCAATCCACAGTTTAGAATAAAGCTCGAGGATccagatgaagatgacgataaCGACAGTTGTCAATTTGTCGTTGGATTGCTGCAGAAAGATAGAAGACAAATGAAACTTCTAGGCCAAGATAACCTCACGATTGGTTTTGCTATTTACAAGATCGATGATGACGCTAAGCAATACATGAACAATGGCCGTCTCAATAAAGATTTCTTCTTGTATAACAAAATGTCGGAGAAGTCGGAGTCATTCGTCAACGCTCGTGAAGTTGTCGGTCGATTTTCGTTGGATCCGGGCGAATATGTCGTCGTACCGAGCACATTCTACCCACATGAAGAAGGAAAGTTTCTGCTGCGAATGTTTTCGGAGAAAAAACGTGACATGGCGATTTCGATTCAGGATTTCATAGCAAACTTCACGAAACTGGAAATTTGTATGCTGAGTCCTGATAATTGCGGACACGTCGAGGGGCATCAATGGCAAATGCTGGTACACGAAGGAGAGTGGCAGCCATTTGTATCTGCAGGAGGATGCAGAAATTATCCTGATACCTTCCATACCAATCCACAGTTTAGAATAAAGCTCGAGGATccagatgaagatgacgataaCGACAGTTGTCAATTTGTCGTTGGATTGCTGCAGAAAGATAGAAGACAAATGAAACTTCTAGGCCAAGATAACCTCACGATTGGTTTTGCTATTTACAAGAAGTCGGAGTCATTCGTCAACGCTCGTGAAGTTGTCGGTCGATTTTCGTTGGATCCGGGCGAATATGTCGTCGTACCGAGCACATTCTACCCACATGAAGAAGGAAAGTTTCTGCTGCGAATGTTTTCGGAGAAAAAACGTGACATGGCAGTATGGCAGCAGAGAAGAATTTGGCCTAGAAGCTTCCAGGTGAATTCGAACGAATTCGAATATCAACAGCTGTCGCAAGAAATTCGAATCCGATCTCCACGAAGACGTTCGACTCGTCACGACAACGTTCGAGAACTATTTCATGCCTTCGAAATTAATTCTCTTTATTCTCAGGAAGCGTTCAAGGAGTACGACAAGGATAAAAGCGGAGACATGGATGCTTATGAACTTCGTGAGCTTCTAGCCAAGTTAGGCTATAATGTTGCCACTGACATTCTAAGTTCAATCGTCCGTCGATATTCAAACAAAAATGGCAGGGTGAATTTTGATGATTTCGTTCAAGTCTGTTGTCGCATCAAGTCTGTTCACGATGTTTACAGGAAACTTGAAGGACGATCATTTACTGAAGAGGATGTAAGTATTGTTAATATATTCGTTTTGCCTGATATGTCGTATCAAAACAAACGACGATGA

Transcript

evm.model.HiC_scaffold_2.1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q11002	Calpain-A OS=Drosophila melanogaster OX=7227 GN=CalpA PE=1 SV=2
P34308	Calpain clp-1 OS=Caenorhabditis elegans OX=6239 GN=clp-1 PE=2 SV=4
Q9VT65	Calpain-B OS=Drosophila melanogaster OX=7227 GN=CalpB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan
PF01067 all species →	Calpain_III	Calpain large subunit, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022683 all species →	Domain	Peptidase C2, calpain, domain III	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036213 all species →	Homologous_superfamily	Calpain large subunit, domain III superfamily	Interproscan
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR033883 all species →	Domain	Calpain subdomain III	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR050420 all species →	Family	Calpain	Interproscan
IPR022684 all species →	Family	Peptidase C2, calpain family	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR022682 all species →	Domain	Peptidase C2, calpain, large subunit, domain III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10183 all species →	CALPAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08585	CAPNN; calpain, invertebrate	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.