Detailed information of evm.model.HiC_scaffold_2.100 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1609027...1612242
NR annotation: XP_002166786.1, 60S ribosomal protein L21 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q02753Large ribosomal subunit protein eL21A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1
Q12672Large ribosomal subunit protein eL21B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1
A0A1D8PGY0Large ribosomal subunit protein eL21 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RPL21A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006391 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01157
all species →		Ribosomal_L21eRibosomal protein L21eFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008991
all species →		Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR018259
all species →		Conserved_siteLarge ribosomal subunit protein eL21, conserved siteInterproscan
IPR036948
all species →		Homologous_superfamilyLarge ribosomal subunit protein eL21 superfamilyInterproscan
IPR001147
all species →		FamilyLarge ribosomal subunit protein eL21Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20981
all species →		60S RIBOSOMAL PROTEIN L21Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0022625
all species →		Cellular Componentcytosolic large ribosomal subunitInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02889RP-L21e, RPL21; large subunit ribosomal protein L21e-Ribosomeko03011deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP