Gene detail

Detailed information of evm.model.HiC_scaffold_2.108 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1675849...1693086
NR annotation: XP_019645914.1, PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X2 [Branchiostoma belcheri]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.108

ATGACGATAAGTGGAGAAGAGCCGGCTGCAGTAGCGGAAGCGGATGAGAGGCTGAATGGGCCTAGCAATGCATCTGCCGCGCCAAGCATCCAGGAGCAAGTAAAGCTTATCAAATCCTGTCTCAATGAACCTCTGAAGGAAGGACAAACATGGTATTTGATTGATACAAGATGGTTTAAACAATGGAAAAGATATGTTGGATATGATATTACACATTCAGATACTGGACAAGAATCAATTCATCCAGGCCCAATGGATAACAGTAATTTACTCAAATCTGATAGACCAGATGCATTGAAGGAGCATCTGATGGAAGAAGTTGATTATAATTTAGTATCAAAATCAGCATGGGATTATTTGTTTTCATGGTATGGATTAGCTAGTGGTCAAGAACCAATCGCAAGAACTGTAAGAGAGCATGGTCTTTATGTCAAAGATCTTAAAGTTGAAGTTTACCTTACTGAACTGAAATTATGTTTAAACACTGATATGGAAGAATGTATTGTAAGAAGATTTAGCAAAACGGCTACTTTGGAGGATGTGATCACTGAAATAAAAACTGCATTCAATGTCCCTGAAGAAAAATCAACAAGACTATGGAACAAATACATTTCAAATACTTATGAACTGTTACAGAATACAAAATCAACTATTCAGGATACAGGTTGTTTTGATGGCCAGGTTTTGGTGTTGGAACTAAAAAACGAAGATGGTTCATGGCCAAGGCAGACAAGATCAGGCTATGGAATGAGTTACAGTTCTTTTAGTGGATATAATGAGGAATCAAGAAGACGTCGTACATCAAGTAGTAGCAGCATGTCAAGCAGAGCTGGACAATGTGGTTTAAGTAACCTTGGCAACACTTGTTTCATGAATTCTGCATTGCAATGCTTGAGTAATACAGCACCTCTGACAAAGTACTTTATTGCTGATAATTACAAACATGAATTAAATCCACAAAATCCATTGGGAATGAGAGGAGAGATTGCCAAAGCATATGCAGATTTAATGCATCAGATGTGGTCAGGGTATAACGGCTTTGTTGCACCAAGAAATTTCAAGaTTGCAGTTGGTCGATTTGCTCCACAGTTTTCTGGTTACCAGCAACAAGATTCTCATGAATTACTTGCATTTTTATTGGATGGTCTTCATGAAGATTTAAATCGAGTGAAAAAGAAACCATATGTCGAAATACCAGACCACGGTGGACGACCAGATGAGGAGCTTGCAAAAGAAGCATGGGCGAATCACCAGCTCAGGAACAACTCAATAATTGTTGATTTCTTTCATGGTCAATTTAAATCAACTGTCGTCTGTCCAGAATGCGATAAGATTTCAGTGACATTTGATCCGTTTTGTTATTTATCACTTCCACTGCCAGTCAACAAAGAGAGAAGTCTGAATATTGTGTTTGTTCCATTAGATCTAACAAGAATTCCACTGATAGTCAAAGTGACTTTGCCAAAGATTGGAACGATTAAAGATCTAACAGAAGCAGTTTCCAAGTTAACTGATGCTGATCCTTTGAAGTTGGTCGCTGCTGATGTTTACACTCATAGATTTCACAAGATTTTCGAGCGTAGAGATTCTCTCAGCCAAATAACAGAAAGAGATGATATTTATGTATATGAAATCCCAGTTTCAATTACGAATTATCGAGAATCAGATCTGATCATTGTCCCAACGTACCTACGTCTCACAAGATCATCACATGTGTCACATAGTTATTCATATGGAGGAAGTGTATCTCTATTTGGTGTTCCAATGCTGGTTCCATTACCTCGTAAAGGCATTAATTATGATGCATTGTACCAGATCATGTTACATACATTTAGACGAGTCGTAAAGAATCCAGcagaaaaggaagaaacttCAGATAATGAAATAAATGGCTCAGCTAACGGCAGtgatgaagaaaaaattaaagatgaCAATCTTGGAAAAGAATCTTCTGATAAAGAATCCGAAATGGACATAGAGGATGAAAAACCAGTGCCAAGGATCTTCACAATAAAATCGGTGAATACTTATGGAAGTTCTGAAATTGATTcatttgatgatgatggaagTGAATTGCGTTTATCAAATCACACATACCTTGCTCTTGATTGGGatccaaaaaataaaaagaagtaTTTCAACGATGTTGCAGCCGAGGAAACAGAGCAACATTCAAGTCTTCGTCAAGAAATTCTCAAGAAAAGAACGATTAAACTTGAAGATTGTCTTGATTTGTTTTTAACGAAAGAAAAACTTGGAGCTGATGACCCATGGTATTGTCCAACTTGTAAAAAACACCAACAAGCATCAAAGAAATTTGATTTATGGGGTCTTCCAACCGTCCTTGTTATTCATCTGAAACGATTCTCTTATAACAGACTGTGGAGAGATAAATTAGACAGTTTGGTGGACTTTCCTATCAGAGATCTAAATCTGACTCAGTATGTCATGAATAAAAATCATCCGCCTGCAGTTTATGACCTTCATGCTGTTTCTAATCATTATGGTGGAATGGGAGGAGGTCACTATACTGCTTATGCAAAGAATGCATATGATGGAAAATGGTATTACTTTGATGACAGCAGTGTATCATTAGCTGATGAAAGTCAAATTGTTTCGAAAGCAGCATATGTCCTGTTCTATACAAGAAGAATCGATCCAACACACCCACCCCCTGCTGTCAATGATCTTTTGTCAGATGACGAAAGTGGAATTTTCGCATCACAAGATGGGTTCAGTGGAGATGAAGATTCCGAAATGGAaacatga

Transcript

evm.model.HiC_scaffold_2.108

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R085	Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus OX=10116 GN=Usp15 PE=1 SV=1
Q2HJE4	Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus OX=9913 GN=USP15 PE=2 SV=1
A6QR55	Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14533 all species →	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF14836 all species →	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR029346 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028135 all species →	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.108.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.