Detailed information of evm.model.HiC_scaffold_2.134 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1888759...1893691
NR annotation: ORX76201.1, hypothetical protein BCR32DRAFT_236744 [Anaeromyces robustus]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1025725S rRNA (adenine(645)-N(1))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp8 PE=3 SV=1
Q84JC0Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g40530 PE=2 SV=1
O43159Ribosomal RNA-processing protein 8 OS=Homo sapiens OX=9606 GN=RRP8 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007484 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05148
all species →		Methyltransf_8Hypothetical methyltransferaseFamilyInterproscan
PF04790
all species →		Sarcoglycan_1Sarcoglycan complex subunit proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007823
all species →		FamilyRibosomal RNA processing protein 8Interproscan
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR042036
all species →		Homologous_superfamilyRibosomal RNA-processing protein 8, N-terminal domainInterproscan
IPR006875
all species →		FamilySarcoglycan complex subunit proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12787
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0008168
all species →		Molecular Functionmethyltransferase activityInterproscan
GO:0016433
all species →		Molecular FunctionrRNA (adenine) methyltransferase activityInterproscan
GO:0031167
all species →		Biological ProcessrRNA methylationInterproscan
GO:0042273
all species →		Biological Processribosomal large subunit biogenesisInterproscan
GO:0016012
all species →		Cellular Componentsarcoglycan complexInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.134.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP