Gene detail

Detailed information of evm.model.HiC_scaffold_2.185 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:2562714...2570980
NR annotation: XP_046893304.1, transmembrane ascorbate-dependent reductase CYB561 [Hypomesus transpacificus]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.185

ATGCTGACACAACCAAATACGTCTTACGTTCCTGAAACCAAAGACTGGACCTCAACTCAAAAAGTAACAGCCATTCTCATTCTCACTGTTATCGATATATCTGCTATCTTTTGCAATGTCTTGATCGTTGCCACAGTCGTGTTTGTCAAAAACATTAGGCAGCTATCCGAAGCTCCACTTGTCGCCAACCTTGCATTTTCCGATCTGATTGTAGCATTGATGATAATACCATATTCCATTGATGTGCTTTTGCATGACGAATTACGCTTCGGCAATGGTATGGCACGTTTTATTGGTTTTAGCAATTTTCTGTTCTGCATTGCATCGATCATTAATCTGACTGCCCTTTCCGTTGACCAGTTCTTGATAATAAAATGGCCTTTTAAATTCGAAACATCCCGCCCAGCATCTTCTAAATTCACGGTTCTGTATGTATGGATACATAGTGCGTGCTGTGCCATTCCCCCATACCTGGGTATTAGCTCATACAGTTGTTTTATCGCCAACATTGGATTCTGCACAGACGAACAGTGGTCTGGACGAGACGACTCCATCATCTTTGCCGTTCTGGTCATCGTATTTTCATGGGGTATTAGCGTTTTGATGCTTGTTTTCGCTTACGCTAATATTTATCATGTCGTACGAACACAGAAAAAGACAATAGCCAGGACAATGGTTCACCAAAAGGATTGCAACCTTTTAAAAGAACCGAAGAGGAGCGGCCAGGATACAAGTGTGCATAATGCCAGCAAAAACATTCTGCAGTCAAGGGAACTAATAGATGCGTGCAAAATATTATCGGCCACTGTCTCCTTTGAAAACCCAACGAAAAGTAATAATATCGAACCTTTCTGGATTGGACAGCAGAATCAAGGCCAGGAAACGTCATCAAGCCACTGGGATCTGAAGAGAAAATTattcaataaaaaacaaaccCCTCGTTGCTCGTGTATTCCTAACTCAAAACCTGCAAGCTCTTTACTGATCATCGTGCTCGTGTATTTAATTTCGTGGACTCCGTTCTGCATCATGCTATTATTAGAAATTGCAATTAAGAAGAAAGAACATCATAATTTGTCACTGTTATTCCTATGGATTGGACACTCAAGTAGCCTTTTAAACCCTCTGCTCTATCTTTATCGTTTCAAGAAGTTCAGAAAAGCAGCAATTTGCCTTATTCGTAATACTTTTTCTTGTAAATTAGGAGTGGGTATCCGTCTAACAGGAAGGATTTTTAACCGATTTTGTCAATCGATCTCAAGTCGTGGTTTATGTTTAACCTCTGAGCAAGTTCATTTGGGAGTATTTTTCACGCGACGAAGAAGAACAGTCGACATGTCAGAGAAGCCTGAAGCTGAAGAAAGCGCTCCAATTTTCGAAGGCCGAATACAAACCAATGAAAGAGGGCGCGTACAAATGGCAGCGGAAGAGACCATAGATGGCAATGAATCAGCAACATTTAATTTCTACCTGCTGGTAGGCATTGCTGAAATCATTGGCATCATCTGCATTGTGATTGTGTTCATTTGGATGGGCCATTACAGAGGAGGTTTTGCCTGGGACAGCTCGCCTAAAGAATTCAACTACCACCCAGTGTTTATGTTACTgggttttgttttcttttatggAAACGGCATGCTAATGTACAGAATTCTAAGAAAAACTGAAAAGATGACTGTCAAGATAATTCATGCTGTGGTCCAGATCAGTGCATTGATACTGGCTATTGTTGGTTTAAAGGCTGTATTTGACTTCCATAATGGATCCAAAATACCTAACTTGTATACATTACACAGCTGGGTTGGAATTACCACAACTGTATTGTTCTGCATGCAGTGGCTTGTTGGTTTTCTTGCATTTCTGTTCCCAAAATTCTCTGATTCACACCGTGCAGACTACTTGAAGATTCACCAGTTTTTTGGTCTGGGTTTGATTATTCTTGCCATTGTAACAAGCATTTCTGGAATCACTGAAAAGCTCATCTTCAGCGTCAAAAATTACAACAAGTACCCAGCGGAAGGAATATTGGCCAACGTACTTGGTTTACTTCTTGTTACTTTTGGTGGATTGGTACTTCACCTGGCTACAAAATCATCATACAAGAGACAGCCAGATGCTGAACCTGTTTATTCCATAATTCAATAA

Transcript

evm.model.HiC_scaffold_2.185

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95245	Transmembrane ascorbate-dependent reductase CYB561 OS=Sus scrofa OX=9823 GN=CYB561 PE=2 SV=1
P49447	Transmembrane ascorbate-dependent reductase CYB561 OS=Homo sapiens OX=9606 GN=CYB561 PE=1 SV=2
Q5RCZ2	Transmembrane ascorbate-dependent reductase CYB561 OS=Pongo abelii OX=9601 GN=CYB561 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043205 all species →	Family	Cytochrome b561/Cytochrome b reductase 1-like	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10106 all species →	CYTOCHROME B561-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08360	CYB561; transmembrane ascorbate-dependent reductase	EC:7.2.1.3	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.