Detailed information of evm.model.HiC_scaffold_2.24 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:420819...426331
NR annotation: KAI8514756.1, E3 ubiquitin-protein ligase ubr1 [Branchiostoma belcheri]
Species abbreviation CQUIN · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6WKZ8E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
Q8IWV8E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
O70481E3 ubiquitin-protein ligase UBR1 OS=Mus musculus OX=10090 GN=Ubr1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003166 (this species only)
Ubiquitin familyE3|E3 activity|N-domain · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02207
all species →		zf-UBRPutative zinc finger in N-recognin (UBR box)FamilyInterproscan
PF02617
all species →		ClpSATP-dependent Clp protease adaptor protein ClpSFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003126
all species →		DomainZinc finger, UBR-typeInterproscan
IPR014719
all species →		Homologous_superfamilyRibosomal protein bL12, C-terminal/adaptor protein ClpS-likeInterproscan
IPR003769
all species →		DomainAdaptor protein ClpS, coreInterproscan
IPR039164
all species →		FamilyE3 ubiquitin-protein ligase UBR1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21497
all species →		UBIQUITIN LIGASE E3 ALPHA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0030163
all species →		Biological Processprotein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071596
all species →		Biological Processubiquitin-dependent protein catabolic process via the N-end rule pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.24.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP