Gene detail

Detailed information of evm.model.HiC_scaffold_2.246 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:3190456...3214566
NR annotation: CAH3179189.1, unnamed protein product, partial [Porites evermanni]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.246

ATGGCTGCTGAAGAGTACAATGCATTTTTCTACTCGCTTGTTTCGAATGACACTGCAGAAATGTATTTCAGCAATAAAAGACAACGATTCTTAATCAACCAAGGATACAGTTATAAAGTAATAACCCGCCTAGCAGGCATGGACGAGGAATCTCTCTCTTACTCTTCACGAAAAGAACAGCAAGAACTACTGCAAAAGGTATTAGCTGCAACTGATGCTGATGCCGATGAAGAGAACGTACCTGGAGATTCCGGAGCTGCACTTGGTGCTAAAAAGaatttcgtaTCAAGACGATCTGGGTCGATGGCTTCGATGTCTGGAGGTGATGACATGATGTACATGGAGTATCGCACTAGTGGATCAAAAACAGATAAGACTAGTAGACATCCGTTATTTAAAAGATTTAGAAGTGCGATATTTGATACCAATTTTCTTCGGCTAAAAAGAGTGATTTTTCAAAGGAAAAattctgaaattgaaatgagcGCTCTGGGTTCTCGTTCGAAAGAAAATGTGGCTTTAGCTGAATTGAAACTTGCAGGTCAGAATTCACATGCTGTCGTAGACTTTTTCGAATCTAACCGTTTTGCTGCGATCTTTGAACTTTTCAAGCTGAATTGTGTTTCATCGCAAATGAAAATGAACGAAAGAGATTCCGTAAGAAAATACAACAATAAGGTTGCAAAAAGAAAACCTTACGTCTTTGTACCTAATCTAAGTGAAGTTATTGGTGGAAGGCTTCGACTACGGTACTCCACTGTTAGCAATACATACTACCGAGATTATGAGGATACCATTAATCCAAAGACAAAGAATACCAAAAGCAACTGGGAAAGCGTCACATATGAGTCAACAGGAATTCAAAAATACAGAAATGAGACGCACGACGAGCTTTTCCTTGGTCGCCAACCAAACCATGACCGAGCGTGTCTTTCTTGGAAATTTGATTTCGCAGCTTCTGGGCTTGTTATTGATACAGTTCAAGTAATGGTTGAAGCTGTTCAAATGCCTTACAACAAATTGGAGCTCTTCATTGAAGGAGATGATAAGAAAGTTTCCACAGATCTCAAAGAAGAGGTAAATTATTCGAAATTCAAAGAGTTGGAGGGATCATCCGCTGTGGTTGTCAGAGTCGTGATATCTGCTGAAAAACCTGGCTGCGACTCTAAGCTTTTCTTGCAGTCAACGGCAGCTAGAAAGTATGATTGCCCGCTTGACATTAACATCAGGCTGAAGCGCCCTGTGGTCGCAGCTGGTAGAAGCCTTTTACTTTTGGGCTTGATGTACAGTAAAGAACAACATATTGACCTGCGAAAGAGACCTTGGCGAAGAAGACCTCAACATGAAACAGATAAAGGCTTTCTGTATATTCATGTTCACGAGGCTAAACGACTACCGTCAAGAATGTCAGGCACACTGCCAGACCCATTAGTTAAATGCAAACTTATGGTAGATGACAGAGGCTTAACTTGTAAGACTCTGCGCGCAAGGAAATCCGTGAATCCAGTCTGGGACGAACAACATGTGGTCGAAGGTATTTCACTTGAAACTGTGAAATCAGCAAAGTTGGAAATTAAGGTCATGCACGATGTTCTTTcatttaataaaaataaaagacGAGAAATACTTGGAACGTCAACAATTGAATCATGTAGTGGATCTGAATCGATATCTGGCGATGAAGATACTCCACAATCATCGCAAATACAACAAAGAAAAGGAAGTCATGAGTTTTCAGAAATGTCTTGCACCAGATTAAATGACTATGATCGATCGATCGATTCTAGAAaaagtagctttgaggaagacatTATCGATGTCTTTATGAACGGCTCAAGCTTAGAAAACAAAccttttcatgaaaatttcagtGAAAGTTGCTTGAATAAACACATATCTGTGTCACTGACAAGTTTACAAAGTGCTGCAAAGAACTCGATTTCTGAAATAGACGAAGGAGGTAAGAGCTCGTGGAGAGCACCTTTGAAGTGGAGAGGTTTTGGAAAGGTTCTGGGGCGAGGTAATAAACAAAGCAGTAAAGGCAACTCAAACTTGAAAAGACCATCAATAGTACTAAGCAATAGTCAAGAAACAATCGTTGTACTAAACCCTGATAATAAAAATGAAGAAGGCCTGAAGAATCTCTCTGATGAGATTATATCAGAAAATGATGACGTCCAGCAATCAATGTCATGCAATAACTTATTAGTATCAACAGACGATACTAATGGTGATCGAAGGAGCACGTTGACACCAACGGGgacccaaaatggtttattggAGCCTTTTGCTCAGTTGCAGCAAACTGCGAAGCTGGCATCGACTCACTGGGATAAAATAGCAGAACATCAAGATCAATGGGTGTACTGTTGGCATCCGTTGACTCTACGATAA

Transcript

evm.model.HiC_scaffold_2.246

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RMT1	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Bos taurus OX=9913 GN=ERCC3 PE=2 SV=1
P19447	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Homo sapiens OX=9606 GN=ERCC3 PE=1 SV=1
Q60HG1	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Macaca fascicularis OX=9541 GN=ERCC3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004510 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan
PF16203 all species →	ERCC3_RAD25_C	ERCC3/RAD25/XPB C-terminal helicase	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR032438 all species →	Domain	ERCC3/RAD25/XPB helicase, C-terminal domain	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR050615 all species →	Family	ATP-dependent DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11274 all species →	RAD25/XP-B DNA REPAIR HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0000112 all species →	Cellular Component	nucleotide-excision repair factor 3 complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17701	SIPA1L1, E6TP1; signal-induced proliferation-associated 1 like protein 1	-	Rap1 signaling pathway	ko04015	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.