Gene detail

Detailed information of evm.model.HiC_scaffold_2.273 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:3466687...3522327
NR annotation: XP_012557485.2, rho GTPase-activating protein 21 isoform X1 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.273

atgaaggtgaagAAAGTTGCTGTTAAACCTACAAGGCAAGCAAGCGTCACGTCTCGAAACTGGACTGGGCCAAGAACTCTCACAGTGCCACGCGATCCTGATGGTTACGGCTTCACCTTGagatattttgttgtttatcCTCCACCTTGTGTTTACAAgccggataatgatgatgatcaagaaaATTACTGGAGCGATTTCGAGTTAGAGGCCGAAGAAATCAGTGAGAAAAAGCCTGAACCACTTGACACGTTCTTTGTGAAAAACGTCGCACCCGGTGGAGCGGCAGATTCCGCTGGTTTGTGTGAAGGCGATCGTATCGTTTCAATCAATGGTAATTTGATTGGAGGCAAATCATACAAAGACGTCGTCGATCTTATCCAGAGTTGTACTGGTGATCTCAAGATTGGAGTGGTACCCAGAGATGAAGATATATTACAGCTGGCCTACCAGGAGTACGTTTACGATGGAGCATCTCTAGGATATACAGAAGGCCTTGAGCAATTGGCGCAAGACTTCGACATGCATCAGCCGAGTGTTAATAAATGGTCGACGCCTATTGTCGGCAACTCTCGTAAACAGTCACGCGAAGAAAACACCGAAAATGCGAAACCTGCATCGGCGAAGTACGATCCCTGTGTAAGTTTTTCGGCCGGCGCACCGGTGATCAAGAAAGATGTGAAATTTTCGCTTACAGTCAAACCGAGTCAATCGAATTCAAACTCAAGCTCTGGTAATAGTACACCAGCGGCCCATATAAGTGCTGCATCGTCTCCTCCAGTCAAAGTAAAAAAGAAAATCGACTCTTGTGTATCTTTCGTTTCTGGTAAGCCAGTATTAGCATTGCCAACCGAGGATGAAAAGTTCAAACGAACTGAGTTTTCGCAGTCAGGCGTCAATCCAGTGACTCTTGATAATGCTCTCAAAAAGACCTTTCAGCATGAGGCGAAAACCGAAAACATGGTGAAAAAAGGACGAGTTATTGTCAAGCAACACTTCGACCAAGACGCCATACAGATAAATAAACCAGAAATCGATCGAGTGAGGTACAGCTACACCTCAggtaaaatcaataaaaaatcggCCATTAGCGTTCTGCGCGAGGATTTCCGTGAGCCGACGTCTCTACGCGAGGATTTCCGAGAACCGACATCTGCAGAAATGTCTCCTCCGGAAAATGACGAAAATACACCATCATCTCCAGAACCGACATTTCAGCTTAGTGTTGCTGTTGCTGAGCGTGAGCTGGGAGAGCAGAAACCTTCACCGAAATATTCTCGTGATTTAATTTCAAGGGGACAACGAGCGAGAGCAGGAGGAAACCTTTCATCGTTAACATCGCAAGCTACGTTGGTGCAGAGCAGAAATGGCTCGCAAATGCCATTCGATCGAAATCAAAGTGCACGAAAAGGAATTCGAAATTACGCGTCGAACCAGGAAAGAGATGTTCAGAACAAGAGAAGGATTCAAACCGATCAAAGAGGAAATAAAATTGGATTCGTCGTCGCAACAAGAGATCATTCATCGTATTACCCGTCACATAAGATATCAAGCTCTTCAGATCTTTCAGATGATGATTCTGTCGCTGAATGCAACAAAGAAATGGACGGTCCCAGTGCAGATGAAGCTGACCCATTCTCTAGAAAAGGAGGTGGCCGAAGAGTCTCTTACCTTATGGCCACTGCAGCAACACCAACCGTAGCCATGCCTCATAAGTTTTCGGATGTTAGCAACCCAGAGGCCGATGACGAAGACAGCGACGCACTTAACAATTCTCAGCATTTACAACGTCAGTACTCACAAGAATCAGTGGAGACTGAAGAAGATGACATGAGGAGTTTACCCGCTTGTCATATCACGAATTCATctaatttctttatttatcCACAGAGAGCAAGCTCAAGGACTTGGAAATCGCTTTATGCTGTTCTCAGAGGGCATTTTCTCTACTGCTACAAGGATAAAGTTGAACTTGATGGAACATCTTACGATGAAGAGCAGATGCAAGTTATCAATCTGAAAGGCTCCGTTGTTGATATAGCACATGACTATGCAAAGCGAAAGCACGTGTTGAGGTTGACTACTCATACAGGATCGGAATTTTTGTTTCAGGCGCCTGATACTCAATCTTTGATGGCATGGGTGAATAGCCTACGAGAAAGCAACCCAGAGAAGGACGCCAATGGTAACGCATACGAAAACGTCATCGTCCGCAGAATGAAAAGTTACGAAGGAGAAACGAACGCCAACTCTGGGACCTCTCCACCAGGACAAACAAAATCGAATAATTCCAAAAGAGGACTCTCTTTGAAGAAGACGCATTTCACTCTTGGTTATAAAAACACGAAAAAACGGGGACTTGTGAACATTCACATATCTCATCCGAAAGATAAAGAAGTACAAGCTACTGGATTCACTTTTGGAATTCCACTTGAGCAGTGTCCCCCCGGTAAAGAAAACAAGTATGTACCGATTTTGGTTGAGCATTGCTGCCGAGTTGTAGAAGAGAAAGGACTTGATTACCTTGGAATTTATAGAGTTCCTGGAAATGCTGCTGCCGTACAATTATTGCAAGAAGAACTTGATACTAAAGAACCTGATGCAATGAATTTTGACGAAGAGAAATGGCATGATCTGAATAATATCGGCAGTTTATTGAAATCGTTTCTTAGAAAGCTACCAGAACCCTTAATCCCGAAAGAAATGTACTCGAAGTTCATACAAGCTAACAGAGAAGAGGACTCAAACGAGCGACTGAAATGCCTTCGTAACTTAGTTCGAAGCTTGCCAGATTACCATAGCCAGACCCTACGGTTTTTGATTATGCATCTTCGTCAAATTGCAGATCATTCCGAAAAGAATAAGATGGAGCCGAAGAATCTTGCTATTGTTTTTGGGCCAACAGTTGTGCGAACGAGCGATGAAAATATGGTTTCTATGGTCAAAGATATGTCAGATCAATGCAGAATAATTGAAACACTTATTCATCAGGCGGAGTGGATATATACTGAAGATGACAGTATTGACTGCGTTACTGAGGACACAGTTAAGGTCGAAAATGATGGAAAATGTTACGTAGCATCGAAAGGATTGTTAGAATCGCTTGGGCAGATGGCTGAAAACTATGAAGGATCTGATCAGCCAGCGAAGGGAAAAGATAAACAAAGTGTGGCTTCAGCAATAATGTCATTGACGAACTTCACGTCTGGAATATCACTAAAGCTTCGGAATAAAGCCATGTCACCTGTTTTCTCGAAAAAGATTGGCAAGACAGAGCAAAACGTAAGTCCAGATCAGGAGACCTTTACTTCTAGTAATAACGATGAAAATATTAGTATTCCGCCTTTACGACGATTGGGATCAGATCCACAGATATTATCCCGTGATATAGAGCCTGCTGCGAAGCCGAATTATCGATCAGAAGGCGAAAACGATGAAGATTTTACGCGTGTTAAATCGAAAATCAAATCGAAATATTCACGCGCACTTCCGCTTGGATCAGCGTCAGTCCCAGTTTCAAATAAACCTCAGACTAGGCCGAATTATGTTAGAAAGAatagtggtgatgatgatagggCAAAACAATCGTCGAATCGTGGTGCAAATATCACTTTCCAAATACCATTACGAGCTGAGGTTACAGTTCGCGATGATTCGAAGAAAGATGCAAATCTTGACGCATACAAAGCAGCGATGCTGAGCGAAAAGACGAAATTACGTCTTCAACAAGTTAGCGTCCAACACCAAGCAGCAATAGATCAACGACAGATCGATAGAGAAAGAATCGAGCGAGAGCACGAGAGAGCATTACGAGATTTGAGACAAGAGGAGGACGACAGTATCGGCGATGATGGTCTATCGCCTGCGATATTACGAGATAGCGATACGATTAGTTCGACAAGTGGTAGCAATGCAAGTAGTCGAAAAGAGAGTTTAGATTCCTTGCCAAGTCCTTTGACAAATAGAAAATATCACGGGACATCGCGAAATATTTCCACGGGTAGCAGTGTTAGCAGTGATGAAAAATCTCCAAGTTACGAGCTAACGCCTGAGGAGATCGAGCAGAGAGAGCGAGAAAAGCGACAACTTGATTTATTTTTAGGACAATTTGAATCTCCAGACGAAGACCAAAAAATGTCTCCAACAAAACCAACGATTTCTCCTACATCAACTACAAATAGAAGTATTACTTCTGTCGAGAATCTTGGAGCTAAGAGCTTAGATGAAAAACTCAGGATTTTACTAGATCCAAATTTCCAAGAGAAAGATGGAAAGCTAGTACGTAGGAACCCAAATGATAGTAAACTAAGCCCTTTGAATAAACGTGCGAATTTCGCTGCATCAATACGTGGCTTAGATAAACCCCTGAAGACCAAAGTAATTGGCCTAAGTGCAGCTAAGATCAATACTCCAATGTATTATGCTGATATGGCAGCACGAATTGATACTTTCAAACAGAAAAAGCAAGAATTAGAGAAAAAGTTTCCAGTATTCTTCAAGACAGTAGCAAAACAAAGGACATTTATGAAAATGACTGTAATAAAACAGACGAACAGAAATCCTACGCAGCGAGTTCTCGTTTCCGCTGCCGACTTGTCTCCGAATTCCAGTCGCGTAGCGCCGGTTACGTACGAAAATCCACTTCGTGAAAATATCGACTCGTCGTTAAAAAGGCTTGATCGAAACGTACAGCAAGTTGTTGAGCTGTTACAGGAATCGCATATGGACGAATTAACTGGTGAAAATTCAGAATTAGCAGCACTATTAAATAATCTTCAACGACAAGCTGTTGTAGATCCAAAGACTCCTGCGAATTCAAATAGGTCAAAAGGGCGTGTAACAGAAAACCGTGATAGGCCTGATAAATTAACTGGGTTTCAGACCAAACGAGGGGACTTCAAGATCACTTCTGTGAATGCTTctgcatcgcatcccaggcatGATAGTACAAAACCTGATCTAGTGCGTGTTCAAGAATGGAGGACTGGCCCACCGTTATCTGGACAATCAAATCTGAAATATAGCAAAATGTATCCAAGACGGTATGCGGTACTTAAGGGTTGGCGTCCAAGTTTTGATCGGTGTTTGCTGCGACCGTACCTCGAGCGCTCGCGGGCTGGAACAAAGCAATTCCAAGACCCAAGTGTCAAAATCGACTACAGGGAGTAA

Transcript

evm.model.HiC_scaffold_2.273

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q71M21	Rho GTPase-activating protein 21-B OS=Xenopus laevis OX=8355 GN=arhgap21-b PE=2 SV=1
A2RUV4	Rho GTPase-activating protein 21 OS=Xenopus tropicalis OX=8364 GN=arhgap21 PE=2 SV=1
Q5T5U3	Rho GTPase-activating protein 21 OS=Homo sapiens OX=9606 GN=ARHGAP21 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002824 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF17820 all species →	PDZ_6	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001605 all species →	Domain	Pleckstrin homology domain, spectrin-type	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR041489 all species →	Domain	PDZ domain 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23175 all species →	PDZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20315	ARHGAP21_23; Rho GTPase-activating protein 21/23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.