Gene detail

Detailed information of evm.model.HiC_scaffold_2.299 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:3868032...3890233
NR annotation: XP_047136971.1, bromodomain adjacent to zinc finger domain protein 2B isoform X2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.299

ATGCATACACACCATGGCATTCAGCACTTGTATCCTTTTGGAGGTCGCTGGTCTAGTTTTTCTCCTGGTAATGGCACAAGCTCTGCAGAAATGAACACAACTTCTGGAGGTACAGCTCACAGTGCCACAAAGCATAGCTCTGGATCGCATGTTTCATCTGCTGTAGCACCAGCTGCAACTACCCAGACCTGGTGGGGTACACCCTCTTTGCACCCAGGACTTTCAAATTCAGATCTTCATTCTTTCCCTTCAGTTCCATGGAATGCTCATGAGCACCATGACCACCATGAGCCACTAAGCTCGACAAGAGAAAGCCATGGATCTCCCTATCACAGTGCACATCTGAGAATGTCAAATGGGCTTCTTTCATCTTCAAGACACAGCCATAGTTACCATCATCCTCATGGCAGTCAATTTCAAAGTGGGACACTGATCCATTTTCCTCATGCTTCCAGTCATCAGTCATCTtcaaataaaaatgaacaaCCATGGCTATCAAATGCAGGAGACTTGTCATCTCATTCCATGTCCTCAAGCCCGTCAGATATTTCACAGTTTCATAAAGACAAAGCTGAAAAGGTAATGCATAATGACCCTCTTCTCAGTTCTGCTAcagagacaaaagaaaaaaatcaaccAAAGAGTTCACTATCTGCAAATTCTGTTGGTttattcaaagaaaaagaaatgtcaGGTTTGTATGGTGCAGATCTAGAGATTCCATCAGTTAGGGAATCAACTAAAGAGCCAATGCATAAGCAAAATGTAAATTTAAGTGAAAAAGACAACACCAATGAGATGCGTGTGAAGGAAAAATCAATTCTTAATCCTGAATCAGAATTCCCAGTTGATAGATCCAAACATAGCCTTCATTCAATGTCATCAATGATTGGTACGTGGCACAACGACCAAGAAAGGAAGCAGATACATGGTGGTCATGATGCTAAATGCACTAAATACAGCAGTTATTACAGAGTGGCTGAAATTGAACACCCAACCAAGGAATCTAAAGCCAAAGAAGATTCTCATTCAAAACAGAGCCATTTCTCTCCAGACAAAAGTTATGCATCATACCCTTATTCGATGCCATCAGACTTAGAAAAGAGCAAGTCTAGTCATGGTGTAATTAATAAGAAATCTTATCTTCATGGGGCTGATAAGCATCTATCAAAGCATGACACCTTTCATATGCATGTTCCAAATCCTGCTTCTCCATCTCATAGGGTGAGTACGTCAAGCAGCCTTCATAGTGAAAGAATGTCTAGAGCACAAGCAACCCAGGACTGGGTTAACCAGCACCCTGCTCTTTATACATCTAGCCCAGAGCATCTAATAaagcatgaccagagagcaaaaTATTCTGAAGAAACAAGTTATACCAATCAGTTTGAAAGAAAGTCAGACTCACTGCCATCAGCATTTCATCAGTCATCTGCAAAGTCAGCCAATGCAAAGAGCTCTAGCAGAGTCGAGAAGACTGCTAAACGAGAACAGCATTATGAAAGTCCACTGAATTCGTCTTTACCAAGATATTCTGGCATGTCAAAGGTTTCTAAGCCAGAATCACCCAAACTGCACACAAAGCATCAGGAATCTCACCACTCCAATGCTCCTAGGTTTCACCATAGTAAACatccattcaatgttgattttctaagTGTCAGTGCCGATTCGGAAAAGAAGCATGAAACTGAAGAACATAGCTATAAAACCGATTATATGAATCCATCTGACAGAGTGTCTGTCATTAAGGGTATGCCAGCAATTCCTGGACTAAAAAAGGACGTATCAGGCCCAATGGTGAATGAGCATGTTAGAAAGGATGTCTTATCGCCAAGAGCAGATCCATTTGAAGCTGCTAGGATGAAGAAGCCTGCCTCCTTACTGGATACTCCTTTGCCTCCTAAAAAGATCGCTGCAGTTACTCCTAGAGATCCGCATATCACAAGCCAGGCAGAGACCAGCTCTAAGTCCAGCGAGGATGGTAGTAGCAGTAGTGAAGAAGACTCCGAGGAtgaggaagaagaggaggaagcaACTAAGGAAGCTGGGAGCCAGGAAAATGGCACAGAAAATGATGACGACAGTGAAGACGGTAGCGAGGAAGGATCAGAAAAAGAAAGCACTGCCTCTGGTTCAGAGTCTGATGAAAACGAGAGCCAGTCACAGTCTACTCAAGATCAAGATCATTCTGATATTACAAGTCTAACAGGTTCAACACCCGAGAAGAGAAAAGCCAACTTTCAGCAAGGCAGAGAAACAAAACGTAGGAAAGTTGTCGACGAAAATCTTCTCAAAGTTCCATTGGAGAGCGGaTGGAGAAGGCAGATCAGAATTCGTCCTACTGGTAATGGAGACAGCATCAGAGGGGATGTTTATTATTTTGCACCGTGTGGAAAGAAAATTCGTACTTACCCTGAAGTCACAAAGTACTTGGAAAAGAATGGTATACACGATCTGAACCTTGAAAATTTCAGCTTCTCGACAAAGACTACTGTCGGGGAATTCTTGGAGTCAAAACAGGGATCTAAATTTGTCGCTCTCAGTGAAGAGGAGGTTCTCAGGCGTCACGAACTTGAGAAGGAAAGACAAACATTACGCTATGAAAGGATGTCCAAGAAGAGAGAGAAAAAGAAACTCAGAAATGAGCAGTCAAGGCGAGCTCAAGAAgctaagcaaagaaaaaaggtagAAAGGCAAGCTGCTATGGAGGAAgcaaaaatattgaagcaacAAAGCATGAAAGCTATTGCGGATCAAAAACGGCGAAAGAAGGAGAATGAAAAACAACACAGAGAAATGGCAAGACGAAGCAAAAAGGAAGCACTACAGCACGCGAAAATGGAAGAAGCGATGAGAAAAGCGCGGGAACGCGAACTGAAGCGGCAACAGACTGTTATTCTAAAACAGCAAGAAAAGGAACGACGAAAACAACATTTGATGATGATCAGAGCTTTAGAATCGCAACGCAAAGCTGAAGAAAGGGAGCgaaagaaggaagaaaagaGACTTGAGAAAAGATtattaaaacagagaaaaatgGAACAACGAAGGTACGAGCGAACTTTGGCACGTGAATTGAAAAAGCCTGTTGATGATATGGTTATCAATGATGGAAaggttattattaatattaagcATTTCATTAAAAtcgacattgtttaTTTACTTATGGTTGAAGAGTTCGTTTATTGCTTTGGTCATGTGCTTGACATAGATCCTGAGTCTGATTTTCCTGGAATGGCAGATTTGCAAGCAGCGCTTTTGAATGAGACATCAAATGAAGACGCACTTTTTACGGCTTGTGAATCTCTGCTTTCTGTGGCACTTCATGATCCAGGAGCTTCGGCTGCTACGACATTGGGAGTTAGTTTGCAAAATGTTGAGCTAAACGAAGGCAATGTTTCCGAAGTTCTTCGATTGTTTATTCTTGCAACAAATGAACATAAACCACACGAGCTTGCTGAGTTGCTTACTGATAAGCCGATCCATAGTCTATCACCTGTGAAAAAAGCTGCGATTCTGGCCTATCTTGTCAACGAACTTCTTTGCAGTGACAGGATATACAACGAAATGGAAAACTGTCTGGAGCACATGTCGAATTTAAGAAGAGATAAATGGAATATGGAGGGAAGAATACGCAAACTGAAGGCCGATCTGAAAACAAAGAAGACGGAGGCAGGTACTCAGAAGGAGCCTGAAGATAAGTCGACTAGTTGCAAACCAAAGCCCAAAGCGTTGGCTAAGAAATTAGCCAATCAGGATGACGAAGCCAGTAATGCATCCATGATTAAagacgaggatgatgatgacgaagatgatgatgacgatgatgatgaagatgataaagatgatgatgataaggacagtgatgatgaagatgctgatgatgacgatgctggCGAAGAAGATCAGGAAGAAGATGAAAGTGATGATACCGATGACGAAACTGAGCCGACAACTGCAGAGGAAATCGAAAAAAGAATAAACAGATTAGAAAAAAAACATTCAAAATATCGGCATAAGCTATTCACTGCTTCACATACGCTGCGAGGACTTTCCTTAGGCCAAGATAGATATAAAAGACGATACCACATCCTGCCACACGCTGGTGGTGTTTACATTGAGGGAATGGAAAGTAGTGAAGTCCCTGATGTCTCATCAAGAGAAAACGTGGAAGACGAGAAAGCAAAACATAGAACGCGGACGGCTAGCGGAAATTATATATCGGATGAAAATGCTACGCCTatagaagaaaataagaaactctCATTAGGACTTCCTTCACCTATTAATGTTCCCAACAACGTTGATAAGACTGTTATCAAGTCTCCAATGATGCGAAGTCCAGTGCTCGGTCCGGGAATTACAAGCCCGAATCATCACGCTCATGCAATGAATAATGTCTTAGACCGAGAACATTTTATGGGTCCGAGTGAAAAATCCGGACTGCTATCACCAAGACATGCTGGGCTTTTTTCACCTACTGGATTTAAAGATAAACCCTCAATGAAATGGTTCAGTTTGTTTCCACAGAAAGCCTGCGACGAAACGTCACTGACAAGATCGAGTATAGTAATGCCTTCTGCTAATAAGGGCAGGCAGATCGTTCCTCCAAACGTAAGGCTTTTGAGCCAAGACAGACAATTTGTTAATTCGTTATCAAACCCAAACGCTGTGGATCGTTTTAGTATGCCAGGCCAAGGAGCAAGTCACCATCATGATAACTTATCAGGCCATAATTTAATGGGTAACGCAGTGTATCAAGGTCATCATGAAACCAAGTTTCCTGGAATGCCTCATTGCAATGATCTGCAAAGAACTGGATGGCCTTCCTCTGATGTTGATATACAGAAACTGATGGAACAGGACCCACAGAAAGCTGCTGTTCTGTTGGATATCCAAAGCTTAGAGCCTGCACCAGTTCCCGAAGACAAACGTTATGGTTGGTGGAGAATCACTGATCCTGATATGGTTCATAAGCTTCTGAAAACGCTGAACACGCGGGGCATCCGTGAGAAAATGTTGCACAAAAGTCTTACCCGGCACACAGACTATGCTTGTAGTTCatgcaagaaagaaaaagaagcatTCCATATCGAAAaccaggaagaagaagaagttaaaGATCCAGAAACTTTGAAAAGTCCGaaaaaggaaaaacagaaaAGCTTCAAACCATTGCCACCTGGAAAAATAGAGGATAAATCCTTTCCACAAGTTGCTTTTTCAATGGATAAAGCTTTGCTGATGGAAGTTGAAGAACTCGAAGAGAAAATGTTCTCTGCTAGTTTACAGAATAAGACCTGGAGATTGTCTCAGAAGGCGTCATCTAATGTTACATACATTAAGAAAGaatcaaagttgaaatcaGAAGAAAAACCTCTTGAGTTAGCGAAAGCAAGAATCCTCTCTCTGGAGCGTGGTATTGAAAGACGCTACTTAAAACCACCATTCCGATTGGAAAAACACCCAAACCAATCGCACGTCTCGAAAAGCAATGGTGACAACTCTCAAGCTGAAGGACAACCTCAAAGctCTGATAAGGATTGGCGTATCACCCCCAGTTTGCTTCTGTGGCGTGAAACAGTTGAAGGCTGCACTTCGTCTGCCCAACTCGTGATGTGCATCAGCATGTTGAAAGATTGTATTGCATGGGAGAGATCGATCATGAAAGTCTTTTGCATTGAATGCAGAAAAGGTGACAACGAAGAACTTCTGCTTCTATGTGACCAGTGTGATAGAGGCTGTCATACATACTGTTGCCATCCTAAACTTGAGAGAATACCTGATGGAGACTGGTTTTGCAGAGAATGCATCATGATTGCATCTGGAAGTGATCAATGTTATGGCTGCCAAGGGTCAACAGGACGAAGATTGAAATGTGAATTCTGTCCAAGATATTATCATCTTCAGTGTGTTGATCCCCCTCTTCAAAAGACCCCACGTTCACCCTGGGCTTGCCCTGTTTGTAAGAAAGAACGCCAGAAGAATAAAAGACcgcagaaaagaaagaagagacCGGAAGATGAATTCGAAACGTTGTCAGCGTTTGAAAAATTCGACATTCCTTCTCTGGCCAAGAATCAGTGgcctatcagttctaaggatCATAGCAGAGACTCGAGTATCGAGTCTACTAGGGAGCTTTAA

Transcript

evm.model.HiC_scaffold_2.299

Protein

evm.model.HiC_scaffold_2.299

MHTHHGIQHLYPFGGRWSSFSPGNGTSSAEMNTTSGGTAHSATKHSSGSHVSSAVAPAATTQTWWGTPSLHPGLSNSDLHSFPSVPWNAHEHHDHHEPLSSTRESHGSPYHSAHLRMSNGLLSSSRHSHSYHHPHGSQFQSGTLIHFPHASSHQSSSNKNEQPWLSNAGDLSSHSMSSSPSDISQFHKDKAEKVMHNDPLLSSATETKEKNQPKSSLSANSVGLFKEKEMSGLYGADLEIPSVRESTKEPMHKQNVNLSEKDNTNEMRVKEKSILNPESEFPVDRSKHSLHSMSSMIGTWHNDQERKQIHGGHDAKCTKYSSYYRVAEIEHPTKESKAKEDSHSKQSHFSPDKSYASYPYSMPSDLEKSKSSHGVINKKSYLHGADKHLSKHDTFHMHVPNPASPSHRVSTSSSLHSERMSRAQATQDWVNQHPALYTSSPEHLIKHDQRAKYSEETSYTNQFERKSDSLPSAFHQSSAKSANAKSSSRVEKTAKREQHYESPLNSSLPRYSGMSKVSKPESPKLHTKHQESHHSNAPRFHHSKHPFNVDFLSVSADSEKKHETEEHSYKTDYMNPSDRVSVIKGMPAIPGLKKDVSGPMVNEHVRKDVLSPRADPFEAARMKKPASLLDTPLPPKKIAAVTPRDPHITSQAETSSKSSEDGSSSSEEDSEDEEEEEEATKEAGSQENGTENDDDSEDGSEEGSEKESTASGSESDENESQSQSTQDQDHSDITSLTGSTPEKRKANFQQGRETKRRKVVDENLLKVPLESGWRRQIRIRPTGNGDSIRGDVYYFAPCGKKIRTYPEVTKYLEKNGIHDLNLENFSFSTKTTVGEFLESKQGSKFVALSEEEVLRRHELEKERQTLRYERMSKKREKKKLRNEQSRRAQEAKQRKKVERQAAMEEAKILKQQSMKAIADQKRRKKENEKQHREMARRSKKEALQHAKMEEAMRKARERELKRQQTVILKQQEKERRKQHLMMIRALESQRKAEERERKKEEKRLEKRLLKQRKMEQRRYERTLARELKKPVDDMVINDGKVIINIKHFIKIDIVYLLMVEEFVYCFGHVLDIDPESDFPGMADLQAALLNETSNEDALFTACESLLSVALHDPGASAATTLGVSLQNVELNEGNVSEVLRLFILATNEHKPHELAELLTDKPIHSLSPVKKAAILAYLVNELLCSDRIYNEMENCLEHMSNLRRDKWNMEGRIRKLKADLKTKKTEAGTQKEPEDKSTSCKPKPKALAKKLANQDDEASNASMIKDEDDDDEDDDDDDDEDDKDDDDKDSDDEDADDDDAGEEDQEEDESDDTDDETEPTTAEEIEKRINRLEKKHSKYRHKLFTASHTLRGLSLGQDRYKRRYHILPHAGGVYIEGMESSEVPDVSSRENVEDEKAKHRTRTASGNYISDENATPIEENKKLSLGLPSPINVPNNVDKTVIKSPMMRSPVLGPGITSPNHHAHAMNNVLDREHFMGPSEKSGLLSPRHAGLFSPTGFKDKPSMKWFSLFPQKACDETSLTRSSIVMPSANKGRQIVPPNVRLLSQDRQFVNSLSNPNAVDRFSMPGQGASHHHDNLSGHNLMGNAVYQGHHETKFPGMPHCNDLQRTGWPSSDVDIQKLMEQDPQKAAVLLDIQSLEPAPVPEDKRYGWWRITDPDMVHKLLKTLNTRGIREKMLHKSLTRHTDYACSSCKKEKEAFHIENQEEEEVKDPETLKSPKKEKQKSFKPLPPGKIEDKSFPQVAFSMDKALLMEVEELEEKMFSASLQNKTWRLSQKASSNVTYIKKESKLKSEEKPLELAKARILSLERGIERRYLKPPFRLEKHPNQSHVSKSNGDNSQAEGQPQSSDKDWRITPSLLLWRETVEGCTSSAQLVMCISMLKDCIAWERSIMKVFCIECRKGDNEELLLLCDQCDRGCHTYCCHPKLERIPDGDWFCRECIMIASGSDQCYGCQGSTGRRLKCEFCPRYYHLQCVDPPLQKTPRSPWACPVCKKERQKNKRPQKRKKRPEDEFETLSAFEKFDIPSLAKNQWPISSKDHSRDSSIESTREL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UIF8	Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens OX=9606 GN=BAZ2B PE=1 SV=3
Q9DE13	Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus OX=9031 GN=BAZ2B PE=2 SV=1
A2AUY4	Bromodomain adjacent to zinc finger domain protein 2B OS=Mus musculus OX=10090 GN=Baz2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002096 (this species only)
Transcription factor family	MBD · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF01429 all species →	MBD	Methyl-CpG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001739 all species →	Domain	Methyl-CpG DNA binding	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016177 all species →	Homologous_superfamily	DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26167	BAZ2B; bromodomain adjacent to zinc finger domain protein 2B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.