Detailed information of evm.model.HiC_scaffold_2.308 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:3948113...3952016
NR annotation: XP_052792623.1, ribosome biogenesis protein WDR12 homolog [Mya arenaria]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7RHG8Ribosome biogenesis protein WDR12 homolog (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g82024 PE=3 SV=1
B4KKN1Ribosome biogenesis protein WDR12 homolog OS=Drosophila mojavensis OX=7230 GN=GI17814 PE=3 SV=1
Q7QJ33Ribosome biogenesis protein WDR12 homolog OS=Anopheles gambiae OX=7165 GN=AGAP007244 PE=3 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005063 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR050459
all species →		FamilyWD repeat RBAP46/RBAP48/MSI1Interproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22850
all species →		WD40 REPEAT FAMILYInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0031491
all species →		Molecular Functionnucleosome bindingInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.308.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP