Gene detail

Detailed information of evm.model.HiC_scaffold_2.333 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:4273006...4309672
NR annotation: CAH3121168.1, unnamed protein product [Porites lobata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.333

ATGGAGGAGAACAAACAGCGAGCCTTGCAAAAAAGGCGTGCTGAAGAGAACCGACAGCGTGCACTGCAGAGGTTGCAGATGTCCCAATCAAAAGGATCTGGTCAGCATTTTGCTGCTGGTGACAGGACTTATAGTGGACTTATGAACGGCAGTGGGAGCCCTAAGCCTGCTCTATCACCTAAGCCTGTTTCACCAGTAGCAAGGGTTATGCCTATGGATACTGCAAAACCATCAAGCATACCTCCTCAGTCTTTGGCTGCCAAGGCCAAGCCCTCTGATTGGAACGAGATTTTCAAGTATTCTCCATCAAagacaaaatcaaatttttataGTGCTACTAAAAGTTCTGGAGTCCAAAGCAGTTCTACCCTATGTTCCAAGTTTGAAAAAAGATCGCCAAAGAAAACACTGGAATCTAAAGACTCGGCTAGCAAATCAAAATGTGGCCCAGCTTTTGATGTGAATATGGTACTTGTGAATTCAAAAAGATTTGAAGCCAGATGTTCATATAATGCTGATGTAATTGGGTTGTTTAAAACCATGAGTACAAGAATGTATGatcaaaaaatgaaaacctGGAATTTCAACTTCACAGAATATTCAAAGTTAGTGACCGGTCTCAGATCATTGAATATATCAATCAAAGTTCATGACGTTCCTGCTCAGATACTGAAGATCATCAAAGAGCTGAACGAAAAAAGTCGAGATGAAACCAAAGTTATTGATTTATCAAAGATTGGCGAAAAATTGACGTCAGCTTTAATGCCGTTTCAACGAGAGGGTGTAAGCTATGGAATACGCAATAATGGCCGAATTCTTATTGCTGACGACATGGGTCTTGGTAAAACCATTCAAGCGATATCATTGGCTTGTTTCTACAGATCTGATTGGCCACTGCTTGTCATATCTCCATCATCTGTCAAAGTGTCTTGGGCAAAGGAATTCGAACGATGGGCTCCCTCGCTAGACAGCGAATCAGTGAATGTAATACACACTGGGAAAGATGACCCCACCAGTGGCAGCATAAATATTCTCAGTTACGATCTACTtccaaaacatttgaaaagacTAAAAGAGAAGAATATTCAACTTATTATTGCGGACGAATCTCACTTCATCAAAAACTTTAAAGCTGCAAGAACGAAAGCTGCTTTGGAACTGTTTAAGagtGCGTCTCGTGTAATTCTTCTTTCTGGTACGCCAGCTCTTTCAAGACCTGCGGAGCTTTACACACAAGTTTCCGCTGTGAACCCAAAGTTGTTTCCAGGATTTCATTCATATGCTCTTCGCTATTGCGATGCTAAAAAGAACAGATTTGGTTGGGATTACTCTGGATCGTCGAATCTTGAAGAGCTAAGGTTCATTTTGGAAAACAAAGTAATGATAAGACGCCTGAAGGTTGATGTCCTTCAGCAGTTACCAGAgaaacaaagacaagttGTCATACTCGACCCTTCAAATGTTAATTCTAAATTTGTGATGCACGAAGCAAGGAAGCTGGATAACGCTGCTGGTaaCGAGAAGCGAGGTGCTTTACTTGAATACTTTTCTGCGTCGTGTGAAGCTAAAAGAAAGCTGGAATATATCGAAGACCTTTTAGAAGGAGAGAGAAAGTTTATTTTATTCGCCCATCATCAGCTGATGCTCAATTCGATATCAGAAATGCTGATTAAGAAGAAAATATCTTTCATTCGAATCGATGGCAGTACTTCGTCAGCTGCAAGACTGGAAAATGTTCAGAAGTTCGAGAAAGATCCATCGTGTTTGGTAGCCGTGTTGTCAATTACCGCTGCAAACGCAGGTTTGAATCTCACATCTGCAACTATAGTGATTTTTGCTGAGCTGTACTGGAATCCAGGAGTTTTGGTGCAAGCTGAAGATCGCGTTTACAGGATTGGCCAAAAGAATGCTGTCACGATTATTTATTTGTTGGCTGAAAAAACTGCTGATGATGTGATTTGGCCACTGGTGCAAAGCAAGCTTGAGGTGCTGACGAATGCTGGTTTGAATCAAGATGAATTTACTCCAGAAATAACCAAATTTCAGGACCCCCACCAAAGACGGATTTCAGAATATTTTCTTGAGCTTATGGATGACGATGACGACTTTCTGAGTTGGATTGATGAGAATGAACCCGAAGCAAAGCCTTGTAAAATGCTGCTTGGGAATGTACGAAACGCATCTGGCTTTCAAGAATACTTCAAAACGAATGGCGCAATGGACGTTGAAGTTTCTGAGGTGATTCACGatgaagaaggtgaagaagaacAGGCCTTGGAGACGAAGATTCCAAAAAGCACGCCTGAAAGTAGAGCTCAGGACCTAGAAGCAATAAAACAACCCGCTACAATGCCTTTCCCACGAACCAATCATCTTTATTCTTTCCCGCCATATGACATCGAacaaaatcaaccaatcagacaGTACAAGCGTGTTTACCTTTTTCGTTGCACATTGAATCAGAAACCTGCCCGCAAACAATGCAATGGACATGCGCTACGACTTTCCACGAACAATAAGGATGCTGGAGGAATAATTGGAAAGATATCTGGTCCATCGAATTTTGGCTCTTCTGAACACGTTCCACCAATCACTATCAGACTTTTAGTGCCAAACAGTCAGTGTGGTCCGCTGATTGGCAAAGGAGGTTCAagaatcaaagaaattagaGAGgcTTCAGGGGCAACAATTACGATACCATCAGAAAACCTCATTGGATGCACGGAAAGGGCTGTTACATTATCAGGCAGTCCAGAATCTCTTGGAAGCTGTATTGAAAAGATATGTGAAATATTCTATGAGTTCCCTCCAAGACAAACCAATGTGAAATTTGTGCCTACCATTGGTGGCTTCGGTGGTGGACCAAATCAGCTTTCATTTATGACAAATCAATTTTCACTGGCAGgCCTATCCAGAAGGACCCAGCAGAAGATTACTTTACCGAGTAGTGTGATTGGGTCTTTAATTGGTAAAGGTGGCTGCCACATTAATGAAATAAGACGATTTTCTGGTGCCAATGTACAAATCGAGGAGGCAAAAGGAAACGGCCGTCGTTGTGTTGTTTCTTTATCTGGAACTCCTGAAGCAGTTAGTGCAGCTAATTTTCTCATTAACGCAAGATGCTGCACCGTTCGGCCACCTCACAAAGCGCGGTTTGTAAAACGTGTTTTGCTTGTGAAGTGGCCGAAGattcatgggagaatagcgatttcctgtaacgggaaccaccCTCTTACTCACGGGCCTATGCAAAACCAGcacaatttttgtgtttttgcacCGCAGAGGTGGCTGCTGCGCATCGTCAGTGTGAACgaggggttcttccatagtaaagTTGGTTTGAATAAATATACTTATATTTCAGAAATTCTGACAACACAGAATGAAAATAACAATGATAGTGAATCAAATGACGAAAGTGCAAGAGAAAGCGATGGATCTGACGCTGAAAGTACGGATGACGAAATCCAGTTTAAATCTCAAACTGAAAACGATTCTACTGCGAACAATACATCGGAAGCTGAAAGAAAGATCTCTAAACTGAAAGAAATGGCTGAGGCTTATTTTGCTGTGCATCATAACAAAAAGATAGTTACATCTGATAGAACTTTGTCAAGACTGCAAAACCCAAGAATGACGCAACAGgaacttcaagaacacTTGTTCGATTCCGCTGGAAATCATAAAGAAGAATGCAGTCGGTTATTCAAAGAATACGTTACTCTATTTCCGAAATGGATATTCCAGTTGAGGCATGGTTTTAATATACTTCTACATGGTCTTGGTTCAAAACGAAGACTGATTGAAGAGTTTCGCAAAAAGATGTTAGCTGACTCAGTGCATATCGTTATCAATGGATTCTTTCCAAGCTTAACCATAAAGAGTATACTCAACATGATTACAGAGGAGCTGCTAAATTATTCTGGATCTTTCAAGAATATCATCGACCAATGCAATTACATTAAATCGGAATATAATTCAGAAGAGGCTAATGAACTGTGTCTACTAATACATAACATTGATGGACCTATGCTACGGAATTCTAAGGTGCAAAATGCTCTTAGTTATCTGGCTTCATCGTCAAAGATTTATGTTATAGCTTCAATAGATCACATCAATGCACCCGTAGTCTGGGATCAGAACCGGTCAAGCAGGTTTAACTGGCTTTGGTTTGACACGACGACTTTCGATCGATATACCGAAGAAACCTCATTTGAAAACtcattgctggtccaacaaaCAGGCTCACTGGCACTTACGTCATTAACTCATGTCTTACGTAGTTTAACGCCGAATGCTAGAGGAATATTTAAGCTCTTAGTAGAATACCAGCTGGAAAATGATAGTGACACAAATTATATAGccatgagtggctgtgctgccagtgctgagacacggctgtaccagtgcgaAAGTGTTGAGAAAATACGTTGCGACGCGCACTGGCGTTTCCATATAGcagtggctgtgccagtgctgaaacacggctgtaccagtgttGAGACAGTGCCAACATCCGCTATTTCTTTACGAAGAAAAGGCAGTGCAGTATGCACTCATGCAGGTTCCCGTGCTTTTGCACGCATGCATTCACTTCATATTCTCAAACCGTTTACACTGGTACTGTAG

Transcript

evm.model.HiC_scaffold_2.333

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P4U8	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis OX=8364 GN=smarcal1 PE=2 SV=1
Q498E7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis OX=8355 GN=smarcal1 PE=2 SV=1
B2ZFP3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Danio rerio OX=7955 GN=smarcal1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04084 all species →	ORC2	Origin recognition complex subunit 2	Family	Interproscan
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF07443 all species →	HARP	HepA-related protein (HARP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR007220 all species →	Family	Origin recognition complex, subunit 2	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010003 all species →	Domain	HARP domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45766 all species →	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000808 all species →	Cellular Component	origin recognition complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.333.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.