Genomic Location: HiC_scaffold_2:4384840...4389200
NR annotation: XP_047137887.1, chitooligosaccharidolytic beta-N-acetylglucosaminidase [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families
| CDS |
| evm.model.HiC_scaffold_2.341 |
| Transcript |
| evm.model.HiC_scaffold_2.341 |
| Protein |
| evm.model.HiC_scaffold_2.341 |
| UniProt accession | Description |
|---|---|
| P49010 | Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Bombyx mori OX=7091 PE=1 SV=1 |
| Q06GJ0 | Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Ostrinia furnacalis OX=93504 PE=1 SV=1 |
| Q8WSF3 | Probable beta-hexosaminidase fdl OS=Drosophila melanogaster OX=7227 GN=fdl PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000994 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14845 all species → | Glycohydro_20b2 | beta-acetyl hexosaminidase like | Domain | Interproscan |
| PF00728 all species → | Glyco_hydro_20 | Glycosyl hydrolase family 20, catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029019 all species → | Domain | Beta-hexosaminidase, eukaryotic type, N-terminal | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR025705 all species → | Family | Beta-hexosaminidase | Interproscan |
| IPR015883 all species → | Domain | Glycoside hydrolase family 20, catalytic domain | Interproscan |
| IPR029018 all species → | Homologous_superfamily | Beta-hexosaminidase-like, domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22600 all species → | BETA-HEXOSAMINIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004563 all species → | Molecular Function | beta-N-acetylhexosaminidase activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0005764 all species → | Cellular Component | lysosome | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006517 all species → | Biological Process | protein deglycosylation | Interproscan |
| GO:0006689 all species → | Biological Process | ganglioside catabolic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016231 all species → | Molecular Function | beta-N-acetylglucosaminidase activity | Interproscan |
| GO:0030203 all species → | Biological Process | glycosaminoglycan metabolic process | Interproscan |
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
evm.model.HiC_scaffold_2.341.Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |