Detailed information of evm.model.HiC_scaffold_2.341 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:4384840...4389200
NR annotation: XP_047137887.1, chitooligosaccharidolytic beta-N-acetylglucosaminidase [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P49010Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Bombyx mori OX=7091 PE=1 SV=1
Q06GJ0Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Ostrinia furnacalis OX=93504 PE=1 SV=1
Q8WSF3Probable beta-hexosaminidase fdl OS=Drosophila melanogaster OX=7227 GN=fdl PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000994 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14845
all species →
Glycohydro_20b2beta-acetyl hexosaminidase likeDomainInterproscan
PF00728
all species →
Glyco_hydro_20Glycosyl hydrolase family 20, catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029019
all species →
DomainBeta-hexosaminidase, eukaryotic type, N-terminalInterproscan
IPR017853
all species →
Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR025705
all species →
FamilyBeta-hexosaminidaseInterproscan
IPR015883
all species →
DomainGlycoside hydrolase family 20, catalytic domainInterproscan
IPR029018
all species →
Homologous_superfamilyBeta-hexosaminidase-like, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22600
all species →
BETA-HEXOSAMINIDASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004563
all species →
Molecular Functionbeta-N-acetylhexosaminidase activityInterproscan
GO:0005975
all species →
Biological Processcarbohydrate metabolic processInterproscan
GO:0005764
all species →
Cellular ComponentlysosomeInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006517
all species →
Biological Processprotein deglycosylationInterproscan
GO:0006689
all species →
Biological Processganglioside catabolic processInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0016231
all species →
Molecular Functionbeta-N-acetylglucosaminidase activityInterproscan
GO:0030203
all species →
Biological Processglycosaminoglycan metabolic processInterproscan
GO:0004553
all species →
Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.341.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Chrysaora quinquecirrha tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Chrysaora quinquecirrha, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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