Detailed information of evm.model.HiC_scaffold_2.409 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5042759...5054484
NR annotation: XP_047136370.1, transient receptor potential cation channel subfamily M member-like 2 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A7T1N0Transient receptor potential cation channel subfamily M member-like 2 OS=Nematostella vectensis OX=45351 GN=TRPM2 PE=1 SV=1
Q91YD4Transient receptor potential cation channel subfamily M member 2 OS=Mus musculus OX=10090 GN=Trpm2 PE=1 SV=2
E9PTA2Transient receptor potential cation channel subfamily M member 2 OS=Rattus norvegicus OX=10116 GN=Trpm2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000935 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01490
all species →		Aa_transTransmembrane amino acid transporter proteinFamilyInterproscan
PF18139
all species →		LSDAT_eukSLOG in TRPMFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013057
all species →		DomainAmino acid transporter, transmembrane domainInterproscan
IPR041491
all species →		DomainTRPM, SLOG domainInterproscan
IPR050927
all species →		FamilyTransient receptor potential cation channel MInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13800
all species →		TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005261
all species →		Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0070588
all species →		Biological Processcalcium ion transmembrane transportInterproscan
GO:0070838
all species →		Biological Processmetal ion transportInterproscan
GO:0098655
all species →		Biological Processmonoatomic cation transmembrane transportInterproscan
GO:0099604
all species →		Molecular Functionligand-gated calcium channel activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.409.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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