Gene detail

Detailed information of evm.model.HiC_scaffold_2.415 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5132781...5145363
NR annotation: XP_047135916.1, nostrin-like [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.415

ATGTTATCCTTTCATAAATTACATCTTGCATTGCAGATTGCAGAAGGGATAAAAATTGATGATAAAGGCAACATACAAATGGACAAGGCAATGCCAAAGGAAACAATAGTATTGTCTGACGAGGAACTAGACGTTGCATCACAGACACCAAGAAAGAAGTATTTAGCTGAAACagttgaaatcaatgaaaaatgCATAGGAAGGAAAATTAAATACTTAAAGAttacaaagaaaattaaaggTCAAAAGGACTTCTCGTTGATTCCACCTAACAGTCTTTTGATTGAAGCAAAGGAAGAGCTACGTTGCAAGGCGAATTTTGGGGTTGGGTGGTGTGCTCAAATAGGAGGAAAGTATTACGACATTGAAGCAATTacgaaatgcttgaaaatttttgaagatttaaaACTCAGGGAAGAAGTATTGGAAGAAAGATCTTGGTATGAGAAGGTTAGAACAGATTTACAGCAGCCTAATATGACGCCACCACTGGAGGAAGATATCGCTGAGCAATTTTTCAGTACCATTCAAAATAACGCTGAAACATACTACTATGAAGACGCCAAGTTGACAGTCAGTCAAATGAAAGCATTAGTCGGCGAACGCTGGCTAAATGGGGCGATTATATCTCGCATTGTAGCATTATTAAACGCTCAATCTAAAGATACTTTTACCTTTGATTTCAACGTTTCTAAAAATGCAAATGATATTCCTCACATTTTACACCGGAATCTCAGGAAGAAATGGCCTGACTGTTTGCCGAAAAAGCTAGCTTTTTCCATCCATGTTGGTTCCACTGGGGACGGAAAGGTTTACATTGGAGATGTGAATTATGAAGATATAAATGTTGAAGCCACGCATTTCACATCTTGTGTTTATGATTCTAAAACAAACTGTTTGTTTTACGGAGATTCTCTTGCTCTGCCAGTACCTgagaagtttttgaaaattttcacggAATTATTAGGGCTTATATATGATGAAAATACAGCCAGTCAGTGCTCTTTTGAATCTATGCATTGTGATGACCATAGCTTAAATCAAATTCATGAATGCAGCAGTAAATGCTGGCATTACTTTCCGCTCCAGAAAGACCATGCTAGTTGTGCGTGTGCCAAGGAAACTCCATCGTCAAAAGATGGCAATGATGTTGAATTGATTCCTTTAAACTCAGAATCAGATATTGCTCGTATTCAAGATGATTTTAAATACACAGATATAAGTCACTTTCGTGAGTCAATTGACCCTGATTTTTTTCGTGTTTTCTGTACGGGTAACGACAACTGCAACGTGAAACGGAAACACTATCATTGCAAACTATGCCCGTTccagaaaaaggaattttttgaATCAAAGTTTACAATCCATTTCGAAAGCGCCCATATGAAGGAAAAAAGAATCGTAAAGTACAGATCTTTGAACATGCTCCCTTGCAAGGCAATACATGAAGATAAGACATTTATAAGGGAAGACGTGGCACACTATCACTGTCCGATTTGTGGTGGTATAATACAACAAAAAACTTTCTTTGAGAAACACTTGAAAATTCACGATGTAACCCCCTCGAATGATTACAATGTTTTAAACTCTAGCCCAAAAGAACTTACGTGCACAAGAATAGCGAGTGAAAAAAGTaatttaaCTAACTTTGATGATCTGAAGAAATACCTTCGACAAGGAAACGATTTCTGCCGAGATGTTGCATCTATCATTAACGAACGTGTCAAAATTGAAACTGCTTATACAGAGAGTCTTATAAAACTGAGTGTCAGAGCTAAGAAGGCCACTGGAGATACTGTCGGAACTATGAAAAATGCTTGGGAAAGCTTTGCTAATCAATGTGAACAAGAAGCGGAAATAAGAAaGGCATTTTCTGGTGATTTGCTTGAACAAATTGTTAAGCCTTTCAAAGCATTTGCAGATGGACAAGCTAAGATGAGAAAACAGGCTGAACAAACTGTTGAGAAGGCTGCAAAATTGCTTGCTGATAAAAAATCCGATGAATTAAAACTTGATGCTAAATGCAAGAAAGCGGAGGAAAGTGTGCAAAAATCAGATAAAGAGCATATTGCCAAAATCATAGACGCTGAAAGAGCAAGACTCTCGTTAGACTCAGTACTAATGACCTCTTGTTCGGAATTACAATCTCTCGAGGAAGAACGAATAAGTTACATCAAGAACATGCTAAAGGCTTATGGAGAATTCTTACAAGACAGCGTGCCAAAAGTCACTGAGTGCTACAGTCAACTACGCAGTGAAATCGAAAGCATTAATATTGAATCTGACATCGAGGCTCTGATGAATACGAGGGGTACACAAAAGCAACCTGGCGAACAAATCATGTCAACTTGCTACgAAGCTGACATGAACTGCCCAATGGATAAACAACGAAGAAAGCTTGCTTTGGAGCACAAGTATGAACAGCTGAACAGAGTTTTAAAATCGGAGAAAAAAGCTAGAGCTGgACTTGGAAAACTTGCTTCAGTTTATCAGGAAACACCAAAATTTAGTGATGCTGGGACTGTTGATGATGTATCCACACAAATATCGCACGCCAATGCTGTAATCGATTGCTTAGATGCCAGCTTGTACCATATCAGCAGTAGTTTGGCATCATTAAATGGGTATGAACCACCACAGCATCGACTTGCTGACTGTATTCACAAAACTAAGGATAAGCAGAATCTACCTCTGCTGGTATTGAAAGTGCCGTTCAATAGAATAACCAAAGGAATTCCAGAAGATAATGAATATGAAGACATCGGTCCACATCAGTATAATCAAACGACATACGATTCAGATGAATTTGAAGATATAGAAGACGCTGCTGCTACTGCATCACAGTCTGCCGCATATGCCATTGCAGAAGCTGCACCATTGGATTACTCAGCCCCAGAAACAACGGAAAACGAAACATGGCGAGCCCTTTATGACTACACAGCGGCACAAGAAGACGAACTCACTATTCAGGCAGGTGACGTCATAACTGTAATCTCGAAATCAGAAGGAGGCTGGTGGACAGGTGAATTAAATGGCTTAACTGGACTCTTTCCCGCTAACTATGTTGAACAATATGAATAA

Transcript

evm.model.HiC_scaffold_2.415

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6WKZ7	Nostrin OS=Mus musculus OX=10090 GN=Nostrin PE=1 SV=2
Q8IVI9	Nostrin OS=Homo sapiens OX=9606 GN=NOSTRIN PE=1 SV=2
Q5I0D6	Nostrin OS=Rattus norvegicus OX=10116 GN=Nostrin PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005407 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.415.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.