Gene detail

Detailed information of evm.model.HiC_scaffold_2.434 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5362277...5384966
NR annotation: XP_031552040.1, uncharacterized protein LOC116289284 [Actinia tenebrosa]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.434

ATGGCAAACGAATGGCAAAATGGTATCTTTGGATGTTTCAGTGACATTGGCGCTTGCTGTTTCACGTACTTCTGTCCTTGCATAACGGCCGGCAAAAATGCTGAAGCGATGGGAGAAAATTGTTGTCTTTATGGTTTTCTGTCAATGCTTGGTTGCATTGGGCTTTTCACTCAGTCACAAATTCGTGGCAAAGTCAGAGAAAAATACAATATTCAGGAAATAAAAGCACATGGTGGAGCTCCAGGTGGAATGGCAATGGCTCTGGAAATCAATGAGATTCTTGAACTGAAAGCTGTTTTCAAAAGACTAGCCAGTTTGTCTCCTGAGGATCAATTCATGAGCAAACAAACTTTTTTGCATTACTTTCCACTGGAAGGGAAGCTTGGTGAGAGATTATTCAGAGTGTTTGACAGAGACAATGATGGCAGAATAGATGCATATGAATTTCTAAGTGGAATATCTCTCTGTCTTCGTGGCTCACTGAGTAACAAATGCGAATTACTTTTCAACATGTTTGACTTGAACGGCGACGAAGGTGTTTCCCAAGACGAACTGTTTAGCATGTTGAAGCCTACATTAAAAGCCGCAGACAGTTTGTCAAGGAAGCCTTCCAAGGATTCTGCTGAGAGCAAAGGTGAGGACTTTAGCGAAGTAGCAAGATTACTTGTTCACGAAGCCTTTGAAGAATGTGATTTGGAGCAGACTGGAAAACTTTCATCTGAAGGCTTTCAGAAATGGCTTGCAAATCACAAAGAGCTTGTCAAAGCAATTTTCAGCAGTCCTTTCCAGTCAGTAATGCGAAGGCGTAAGTTTGAAGAGCTGAAACCCGAGGCTGTCAGAAACCGCAGgATTCAGCCGCAGACGTGGATGAAcgaatttaatgaaaatgattctTGGAATGaagCTGAACCAAGTGACAATCTAGAGAATGCAATTTATCTTTGGAGCCCGATTTTCCCGAAAACTTCTGCGAAATTTCCACCTAGTAGATTGAAACACGCCAATGTTTTGTACAACGGACACATTTTCATATTTGGAGGTCGTGGCAAGTCAGCTACACTGAAAGATGTATGGATTTATAAGATTGGTGAAAATGTTTGGAGTTCTGTAGAGCATCAAGATGGAGCGAGGCCTTCGGTTTTACAAGAACATACAGCTGTCGTTTACAAAGATAATGCATATATATTCGGTGGTGCATTTACGACAGACGATTCCACGCCTTTTTGGAGCTACAACTTTGATACATCAACTTGGAAGAACCTTGGTCGAAGAAAGTTCCAGaagGAGCCATCAAATCGTCGAAGCCACACTGCTGCTGTATATAGGGATTCAATGTATATATTTGGTGGTTACTTGGACTCTGGAGTGTCTACCAACGATATTTGGCAATATAATTTCTCGACCTTTCGATGGCGTCTGCTAACCCCTCAGTCAGGTAGTGATGTCATCTCAGCTCGACATTCACATTCATCTGTTGTTCATAATCATGCACTTTGGGTGTTCGGTGGACTAGACAAAAGTGGGAGGAAAAATGATCTCTGGAGGTGGAATTTTGAATTGTCTGTCTGGAGCAGAATTCGCTGCAGAAATAATCCCCCGGTAGTAGCAGGCCATACATGCTCAAAGGTTGGTTGCCTGATGGTTGTCTTTGGTGGGGAAAGTAACACAGATCTGAGAAACGAAACTTGGACGTTTAATTTTGAGTCTTGCAAATGGACCAAAATAACTCCTTTTAGCTCAATAAGCCCGACAATACGAAGCCACCATACAGCGGTCGTATTAAACCCTTATTCAATTCATAGTGGAATAGTCAGAGTAAGCCGACCGAATACTACAAAATCTGCTCCGGACTCGACAAACTACGACCGATTGGCAAGGAATGGATCCGGGCTGTCGCATCGGGTCGCTTCGGCTGATTCGATAATAGACTATCATCAAAGGCGTGTAGTAAAAGGAAAAAGCCTTGACTTACAACTTCAGTTAGACAACGATGGATATGATCGAAGTTTTCCGGATGTCTCTTGTGACGAAATGGATAACCATAACTTCTGGTCGTCTGAATTCAGTACAGAATCCGATATTAATAATGACTGCGGGGCAGCGGAGACTTCTTTTGTGCAAAGTGCAGGAGCGTCAGGGACAGATCATATCAATTGGGGTATCATAATAATTGGCGGACGGGGGAAACATAGCTCAGATATGTATAAAACAACCGTCGATATATGGAAATGTGATATTGGGCAAGATATTGGAGCACATTACCAGGTGAAAACAATCTCCGTTAAGGAACAACATCCACAGCCAATACGCTTGCGCAGTCAAACAGCAAAGCCACGAGTATTTAAAACAGAGGATAAGACATTTGAAAATGACTCGAGAGAGATGAAACAGAAATTAATAACCAAAGAATCGAAACTTTATGACAAATTGATCATCACGGATTTAACTACGGATAATGAAGAAAGCGAACTTGTGAGCTCACGTTGGGAAACGAAAAACCTTTTGAGGTAG

Transcript

evm.model.HiC_scaffold_2.434

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HAE3	Calaxin OS=Homo sapiens OX=9606 GN=CLXN PE=1 SV=1
Q32L26	Calaxin OS=Bos taurus OX=9913 GN=CLXN PE=1 SV=1
Q9D3N2	Calaxin OS=Mus musculus OX=10090 GN=Clxn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23244 all species →	KELCH REPEAT DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.434.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.