Detailed information of evm.model.HiC_scaffold_2.476 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5834933...5844110
NR annotation: XP_020620549.1, uncharacterized protein LOC110058272 [Orbicella faveolata]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q87NG3Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
Q87PP5Glycine betaine/proline/choline/ectoine transporter VP1456 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1456 PE=1 SV=1
P9WPR6Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000591 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02028
all species →		BCCTBCCT, betaine/carnitine/choline family transporterFamilyInterproscan
PF03083
all species →		MtN3_slvSugar efflux transporter for intercellular exchangeRepeatInterproscan
PF04749
all species →		PLAC8PLAC8 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000060
all species →		FamilyBCCT transporter familyInterproscan
IPR018093
all species →		Conserved_siteBCCT transporter, conserved siteInterproscan
IPR004316
all species →		RepeatSugar transporter SWEET repeatInterproscan
IPR006461
all species →		FamilyPLAC8 motif-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30047
all species →		HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0071705
all species →		Biological Processnitrogen compound transportInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006810
all species →		Biological ProcesstransportInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.476.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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