Detailed information of evm.model.HiC_scaffold_2.477 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5844155...5846976
NR annotation: XP_012562913.1, glycine betaine transporter 1 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6F754Glycine betaine transporter OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=ACIAD3460 PE=1 SV=1
P54417Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) OX=224308 GN=opuD PE=1 SV=1
P45335Uncharacterized transporter HI_1706 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1706 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000591 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02028
all species →		BCCTBCCT, betaine/carnitine/choline family transporterFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000060
all species →		FamilyBCCT transporter familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30047
all species →		HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0071705
all species →		Biological Processnitrogen compound transportInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006810
all species →		Biological ProcesstransportInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.477.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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