Detailed information of evm.model.HiC_scaffold_2.481 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:5887105...5902088
NR annotation: XP_030828888.1, SCO-spondin isoform X3 [Strongylocentrotus purpuratus]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P28799Progranulin OS=Homo sapiens OX=9606 GN=GRN PE=1 SV=2
P23785Progranulin OS=Rattus norvegicus OX=10116 GN=Grn PE=1 SV=3
P28798Progranulin OS=Mus musculus OX=10090 GN=Grn PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001772 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00156
all species →		PribosyltranPhosphoribosyl transferase domainDomainInterproscan
PF11969
all species →		DcpS_CScavenger mRNA decapping enzyme C-term bindingFamilyInterproscan
PF00396
all species →		GranulinGranulinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000118
all species →		DomainGranulinInterproscan
IPR029057
all species →		Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan
IPR037277
all species →		Homologous_superfamilyGranulin superfamilyInterproscan
IPR006150
all species →		RepeatCysteine-rich repeatInterproscan
IPR000836
all species →		DomainPhosphoribosyltransferase domainInterproscan
IPR036265
all species →		Homologous_superfamilyHIT-like superfamilyInterproscan
IPR005904
all species →		FamilyHypoxanthine phosphoribosyl transferaseInterproscan
IPR039036
all species →		FamilyGranulin familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12274
all species →		GRANULINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004422
all species →		Molecular Functionhypoxanthine phosphoribosyltransferase activityInterproscan
GO:0006166
all species →		Biological Processpurine ribonucleoside salvageInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.481.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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