Gene detail

Detailed information of evm.model.HiC_scaffold_2.507 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6103169...6104732
NR annotation: XP_028391486.1, protein phosphatase 1 regulatory subunit 3B-like [Dendronephthya gigantea]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IN01	Protein phosphatase 1 regulatory subunit 3B OS=Rattus norvegicus OX=10116 GN=Ppp1r3b PE=1 SV=1
Q8C767	Protein phosphatase 1 regulatory subunit 3B OS=Mus musculus OX=10090 GN=Ppp1r3b PE=1 SV=1
A6QNP3	Protein phosphatase 1 regulatory subunit 3B OS=Bos taurus OX=9913 GN=PPP1R3B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000769 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03370 all species →	CBM_21	Carbohydrate/starch-binding module (family 21)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050782 all species →	Family	Protein phosphatase 1 regulatory subunit 3	Interproscan
IPR038175 all species →	Homologous_superfamily	CBM21 domain superfamily	Interproscan
IPR005036 all species →	Domain	CBM21 (carbohydrate binding type-21) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12307 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000164 all species →	Cellular Component	protein phosphatase type 1 complex	Interproscan
GO:0005979 all species →	Biological Process	regulation of glycogen biosynthetic process	Interproscan
GO:0008157 all species →	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:2001069 all species →	Molecular Function	glycogen binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.507.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.