Gene detail

Detailed information of evm.model.HiC_scaffold_2.524 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6254532...6260031
NR annotation: CAH3130926.1, unnamed protein product [Pocillopora meandrina]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.524

ATGGTTCATGTATCAGAGTGCGATTCTTCTGAAAATGCCTTTCAACAATCATCGGAGAATCCCCAAAAAGATTCGCCTTCAACATCAAATAATCAACTCGCAAGCGTTCAGCTTCAGCTGGGCCCAGAAATGCATCAACAAACACAAGATGATGATGGCCTAGCCACTGAAAATGATGCGTGCGACCGGAAAGAAACTCAAGACTCTGTTAGGTGTAAATGTAGCTGTCATTTTACAAACAAAATATGTTCATACGATATAAACTCGATGGAAAGTACCAAGTTTCGCGATCTTTTATTGCTTCATCTTGATTTAATTGAACAGCAAAACATTACTATccaaagaaaagataaaattattcagcaaatgaaaacagaaaatgatCAGCTTAATGCACGATTGAATCGGATGGAGAGAAGAATTGCTTTGAAAATTCGGAAAGCAAcagatgatgctgatgctgacaCAGGAAAAACTAAAATGCATGATAATAAAAGAAAAAGTCTGTCAGAGAGATGTGATCAAAAGCTGAAAAAGTCTTTGAGTCATACTTCAGCCATAACAGTATCATCAGAGCAAGGAAAAGATAATGGCACGGGAATgtatttaaaaacaaattttacttACTTGCATTCAaagaactattcttcatttgaaAATGATCAAACCAAAGATATTGGAAATACATCGAAAATACAAGTACCTTTCTGGAAGAATACtcaaacaaaaacacaaaaaagcgaAGAATCGAAAAGCTCGCATAGCGATATTCAAGAAACAAATGAAGAGCAAACTGACGATGAAACTTATTTGCGGCGCCACTCAAAAATGGAAGCTGACGAAATTCGCCGAAAAAGATGGGACATACAACAATTACGACAAGAGCGAATGCAAGAATCTCTCAAGCAACGGCAAAAAAGTCGTGAAGATGTCAAAAACACAAGATCAACGTCAGATCTAAACAAAAAGCAATTTGACTCACTTCATCCTTCTTGTGACCGCGTTATGGCTTTAGAAATCTCAGATGCTATTCCAGTATTTGCTTTAGGATCAAGAATTCCTCAGATGCAACAAACATACTTGATCATCGTTTTGGACCCTGTCAGCCCGCCACAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTTTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTGGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCACAGAGCCCGCCACAGAATCGGCCATGAGCCCGCCACAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTGTCCATGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTCGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCACAGAGCCCGCCACAGAATCGGCCATGAGCCCGCCACAGAATCGGCCATGGTTCTTGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTGGATCCTCACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCATGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTGGATCCTCACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGACGCTGTCGTGGTTCTGGATCATTACCAAAGAATCGGCCATGGTTCTGGATCCTTACCAGTGACTTGTCCGTGGTTCTGGATCCTTACCAAAGATGCTGTCATGGTTCTCGATCATTACCAAAGAATCGGCCATGGTTCTTGATCCTTACCACAGAGCCCGCCACAGAATCGGCCATGGTTCTTGATCCTTACCAGTGA

Transcript

evm.model.HiC_scaffold_2.524

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JRX0	Male-specific lethal 1-like 1 OS=Danio rerio OX=7955 GN=msl1l1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007249 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15275 all species →	PEHE	PEHE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026711 all species →	Family	Protein male-specific lethal-1	Interproscan
IPR029332 all species →	Domain	PEHE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21656 all species →	MALE-SPECIFIC LETHAL-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0043984 all species →	Biological Process	obsolete histone H4-K16 acetylation	Interproscan
GO:0072487 all species →	Cellular Component	MSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.524.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.