Detailed information of evm.model.HiC_scaffold_2.535 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6353557...6356030
NR annotation: XP_033645645.1, 40S ribosomal protein S13 [Asterias rubens]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P62279Small ribosomal subunit protein uS15 (Fragment) OS=Sus scrofa OX=9823 GN=RPS13 PE=2 SV=2
Q56JX8Small ribosomal subunit protein uS15 OS=Bos taurus OX=9913 GN=RPS13 PE=2 SV=3
Q6ITC7Small ribosomal subunit protein uS15 OS=Gallus gallus OX=9031 GN=RPS13 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008229 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08069
all species →		Ribosomal_S13_NRibosomal S13/S15 N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012606
all species →		DomainSmall ribosomal subunit protein uS15, N-terminalInterproscan
IPR023029
all species →		FamilySmall ribosomal subunit protein uS15, archaea/eukaryotesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11885
all species →		RIBOSOMAL PROTEIN S15P/S13EInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →		Cellular ComponentribosomeInterproscan
GO:0006412
all species →		Biological ProcesstranslationInterproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0022627
all species →		Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0070181
all species →		Molecular Functionsmall ribosomal subunit rRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.535.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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