Gene detail

Detailed information of evm.model.HiC_scaffold_2.574 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:6720057...6740591
NR annotation: EDO43602.1, predicted protein [Nematostella vectensis]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.574

ATGCAGTTTACAAAAGATTCAGAGCATAATATTCACAGTATGGACAATCAAAATGAAACTTGGCTAAGTGAAAAAGGAGCATGGCTGACTTATTTCATCCTTGTGGTATTcatgcatcttgttcttctaaGTGTTCCATTCTTTGATACTGCAACAGCCTGGACCATGACCAATGTCATTCATAATCTGGGGAACTATGTGTTATTACATCACGTCAAAGGAGCTCCATTCCAAACATTTGATCAAggtcaagcaagaaaattaactCATTGGGAGCAGATTGATCATGGAGAAATGTATACAATGACAAGAAAGTTTCTTACACTTGTACCCGTTCTGCTatctgaaaaaacagcaaagaatATCACCTTCAAAATGGTAAGTTCACAAGTTGTGGTTGCATCATCGCAGCCATCATCTTCTGCTGAGACTGATGGGAGTGGAAGAAGACGGTTCACTGAGTCAAGGACAAATGATCCATATGGTGGTGAATCTCAATCAAGAGAGAGCAAATCAGAGTATGATCGGGGTTCATCAGAAAGAATTAGAAGTGAAAAATCAAGGAGGGATGATAGGGATAGGGACCGAGATAGAGACAGAGACAGAGATAGGGACAAAGAGAGGGACAAAGAGAGGGACAGAGACGGAAGGGCAAGATATGATGATGGATCTGAGAGAGGAAAGGACAGTAGATCGTCATCACATAGAGAAAGAAGACATGgggattatgatgatgattcaaGAAAGGATGACAGGAGATCTGATTCCAAACATCGACATAAACATGataagaaaagcaagaaaaaacataaacatagatcACGATCAAGATCAAAAGAACGATCAAGCAAAAAAGATGATAGAAAACGaaagaatgaaaatgatgaatCTTCAAAAGAAACCAAGATCAGaaaaacagaagaacaagaagaagaagaacctgCTCCAATAAAGAGAGAGCCTATTTCACTTGAAGAGCTTATCTCAAAGAGAGAAGCTGAAAAGAAAGCCCAGGAGAAGCCAAAGTTTTTGACAAAAGAAGAAAGAGCAGCTGAAGCTTTGAGGAGAAGACAAATGCAAGTTGAAGAACAAAAAAAGCAGTTAGAGGAAAGTAAAAAAATGAGAGAAGATTATTTAAAGGAAGCTGATCATTCCAGAGACGATTGGGATCGAGATCGATACAGAGACAGAAGAGGGAGGGACGGCGATAGAGAACGAAGAAGAGACAGACATGCGTCACCAGAAAAACAGAATGATGCAAATAAAGAGTCACAAGATGTAAcgataactaggaatcaggtaatcagtctacttCAGGCTCGCTACCTTGGAATTGTAAAGAAGAAGCGTAAAATTAGAAAATTGAATGATCGCAAATTTGTATTTGATTGGGATGCTGGAGAAGATACATCGAATGATTACAATCCATTATACAGTGAAAAACACCAGATCCAGCTGTTTGGAAGGGGAAATATTGCTGGAATCGATATTAAGGCTCAGAAAAAAGGTCAGTCACAGTTTTATGAAGATCTGATGGAAAGACGAAGGACGGATACAGAAAAGACAAGTGCAgtAAAAAGGATTAAGACTGCTGTAGATAAAGAAATCGAAAAAGAATACAAAGAAAGACATTGGACTAAAAAGAAATTATCTGAAATGATGCCACGAGATTGGCGTATCTTTAGAGAAGATTTCCATATTACGTGTAAAGGAGGGAACATTCCTAGTCCAATTCGATATTGGAAAGAAGCAAACCTTACACCAGATATATTGGATATCATCGACAGTCTCAATTACAAGGATCCAACTCCAATCCAGAGGATGGCTATTCCAATTGGACTTCAGAATCGAGATATTATTGGTGTGGCAGAAACAGGTAGTGGTAAAACAGCAGCATTTGTTATTCCATTGCTTGTTTGGATCATGAGTTTGCCTGCTTCGGAAAGGGATACTGGTGACCAAGGTCCTTTTGCTATTATTCTTGCACCAACCAGAGAATTAGCTCAGCAGATTGATGAAGAGACACAAAAGTTCTCTAAAAAGCTTGGAATAAGAACGGTCAACATTATTGGAGGACTTTCAAGAGAAGAACAAGGCTTCCAGTTACGTCTTGGATGCGAGATTGTTATTGCCACCCCAGGAAGACTGATCGATGTTCTTGAAAATCGTTATTTGGTTCTCGGACAATGCTCATATGTTGTTCTCGACGAAGCAGACAGAATGATCGATATGGGTTTCGAACCGGACGTCCAAAAGATATTAGAGTTTTTACCAGTTTCAAATGTAAAACCGGACACTGAAGATGCTGAAAATCCTGAGTTACTCACGACGAATATGTCCACAAGAAACAGATTCAGACAGACTGTCATGTTCACAGCAACCATGCCTACTCAGGTTGAGAGACTTGCTCGGGCTTACTTGAGgCGCCCTGCTGTAGTTTACATTGGTTCTGTCGGCAAACCTGTTGAAAGAGTAGAACAACGCGTGATGATTCTgaaggaaaatgcaaaaaaGAAGAAGCTTGTTGAAATTCTCGGTGCTGGCATTGACCCGCCTGTTATCATCTTTGTCAATCAGAAAAAGGGTGCTGATGTGTTGGCAAAATCGCTGGAAAAAATGGGATACAAGGCAACAACATTACATGGAGGCAAAAGTCAAGAACAAAGAGAATTCGCGCTGAGCTGCTTGAAGGCTGGAGAAAAAGAAATTCTAGTAGCAACCGATGTTGCCGGACGTGGTATTGATATCAGAGATGTCTCTCTCGTGCTGAATTATGATATGGCGAAGACAATTGAAGATTATACTCACCGTATTGGACGAACCGGCAGAGCTGGCAAGAATGGAATCGCTGTTTCATTTTGTACCGAAGATGATTCGCATTTATTCTACGATTTAAAACAACTTGTTCTATCAAGTCCGGTAAGATTTTGTACATTTCTGGTAAACGCTTAA

Transcript

evm.model.HiC_scaffold_2.574

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BUQ8	Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Q5RC67	Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Q5BCU6	Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002843 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF04061 all species →	ORMDL	ORMDL family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050079 all species →	Family	DEAD box RNA helicase	Interproscan
IPR007203 all species →	Family	ORMDL family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959 all species →	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12858	DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.