Detailed information of evm.model.HiC_scaffold_2.606 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:7094098...7096759
NR annotation: AAD32575.1, Scox-1 homeodomain protein, partial [Cassiopea xamachana]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P21523Homeobox protein LOX2 (Fragment) OS=Hirudo medicinalis OX=6421 GN=LOX2 PE=2 SV=1
P15860Homeobox protein H90 (Fragment) OS=Apis mellifera OX=7460 PE=3 SV=1
Q9IA12Homeobox protein Hox-D8 OS=Heterodontus francisci OX=7792 GN=HOXD8 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000082 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR046333
all species →		FamilyHomeobox protein Hox-A10/abdominal-B-likeInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45874
all species →		HOMEOBOX PROTEIN ABDOMINAL-BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.606.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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