Gene detail

Detailed information of evm.model.HiC_scaffold_2.672 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:7689012...7757327
NR annotation: PFX30200.1, hypothetical protein AWC38_SpisGene5015 [Stylophora pistillata]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.672

ATGTATCGAACCGACGAGTCAAAGTATCAAAACTATGGGTCAAAGTATCAAAACGACGAGTCAAAATATCGAAGCGATGAATCAAAGTATCGAAAACGACGGGTCAAAGTATCGAAAGGGCGATCCAAAGTATCGAAACGACGACTCGAAGTTTCGAAACGACGAGTCGAAGTATCGAAGCGACGGGACAAAATTTTTGTCCATAGTTTGAGTTCATGTATGTTAGGACACGAAAGAGAAATGAAACCAATTGAAGAAACAATGACGCATAAAGAAGAAATTTCTTGCGATTCACCATCTGCAATGGAGAGCATTTCAAGTGAATTAAATGAAAATCCTATACATTCAAATGTTAAGATGAGAGATGAGAAGGATGAACAACTTGGAGAATTTGATGGAATATTCAGTGATAGCTGTGATGATGACTCATCCAGTGAAACAGAAAGCGACGAGGCAGATAACTTCATTTACGAATTCAAGGAGTTTgttgaaaaagtaagaaaaagaaagaaagacacTGCCAATGCTGGAGAGAAGATCGAAGATTTGTTAGTTGCTGCAATGACATTTGATCGTTCATACAGTTTGCCCGACGAAGTGGTCTGTCATTTATTGCTGGTAGCAGTTAGAAAAAAATACAGAAACTGTACTATTGGACGATTCTTGATTGATAAGTTGAAAGACCCATCCTTTGCTGGCTTTTATGATGTACTGCTGACATATGCCGAAGAAAATGCCGTTGATTTCTTCAAGAAGAATGGTTTCATTGATGATTCTATTCTTGCTAGCAAATACCGAAAAGTTGGTGAAAATTGGCTAAATAGTACACCGATGTGCTTTGTACCTCCTTTTACCTCTACATGCCTTTCTGGTTACAATGAGAAGAGTTTAGTCGATCAAAGAATTTCAGCCATCGAGGAACAGATTGACAAATGGAAAATTCAACAGACATCTGCCTACCAAAACCAAATCCTGGGCATCTTAAGACTTACACAGCAGCTAAAATCCCTTAAAGATACTgttgaaaaacaagaaaagatgattgagcatttgaaaaatgaaaaccttcGACTTCGTCAAGGCATACAATCCAAAGATGAAAGTGCAGATGTTTTGATTAAGGGAaaggatgaaaatgaaataaaatgggAGTTTACGCAACAAATGTTAATGGAAAAATCAACTGTTGATGTAGACGTCATTGGAATGAAAAGAACTTCAGCTCCTGACGGTTACGACTCAGTTCTGACCATGGGTAGGCAAATTTGTGGCAATGAAAGTGTAGCAAGTGAATACATCATTTATGATACTGATCAGaggcctattctccctggggacgaggttgacgaAACCCGATCCCCGCATCGAATCCCGAACCCGGAGCTGGCACAACTCAGTCCAAGTCAATGGTTCACTCACGGAAGCACCAGAGCTTTATCAATAATGGCTGACATGACTTTATTTCAATTTCCTTACCCTGTTTTGAGTCGAATTTTCGAGCTTTTGCCTGTATTGGATATCATCAACATATCCAAAGTTTGCTCGTATTGGAAAGAAGTTGcttcaacatttttaaaaacaGTCAAGATCGATGCAAGTACTCCTTATGGTGGATCATGGCAGAGATATTATGAGGAAAAGAAAACAGCCAGAGAAaatgattttgagaaatttgctTGGGAGCTTGCAGATTGCACAGACGAAATAGAGCATTTGTCTTTTGAATATTATAATGAAATTCCTGAAACTGTTTTCGAAATATTGCTGTCAAGTCAAAAGGCATTGAAAACTCTTGTTCTGAGTCATGATCCAGAGGAAGCTACCCAGGATGAAGGTTTTgatctggaaaattttgaatggAGGGTTATTCCACAACCATCACATTCCATAACACAAGCAATAATTAGGAATGAAAAGTCacttgaaaaaatcaatattggaataaaaagtgattttctttcatttaaagAAATGGCAGATGCCTTTCAAGACAAGAAGACATGTTTTCCAAATTTAAAGGCAATAGAATTCCTGTCCACGACAGCTGGTTGTTTTGGTTATTATAAACTACCAGATGGAATTATTGACAAAGCTGTTGAGTTAAAAAGTGCGGAGTCAGTGTTTAAAAAGATGTTTGCAAATTCTAAAATCAAAGAGCTAAATTTCAAACCAAATATGTATGTAAATTTATGTTATGGTAAGGAAATATTTTGGGACCCTTCATTCATGCTGTTATTGACAAATCGCTTTATGTTAGGGGCTTTCTCAAATCTACGGAAAATCAACATTAACAGTCTAAACACAAGAGGACTAAATGGTGTTTTCTcagatgctgatgctgatttACTTATTGAACACTGCCCTCATATTACCCACATTGATTCTGACCTCTATCTTAGTAAATATATTCATCATTACGCTTCTCCTGTTCTTGATGAAAAGTCATATATTAAGATTTTTAAACATTATGGTCCTCAGCTGGTTCATATCCATTGCTTTATGAAcacaaatattgcaaaatgcatTGTGGAAAACTGCCCAAAtgtaaaaaatttaacaatagCCGATAATTTTTGTGGTGAATGGCTCTCAGATTCAGCTTTGATAGCATTGTCTGGCttagagaaattaaagaaagttACCATTTACTTTTATCAGTATGCTAGCTATGCATTAATGACCTTTTTAGGGAAACGTATGCATCAATTAACAGAACTGCAGATATTTTTTGCTGTGCGGAGACCTCATGAACTACCTCATCAGACATGGAATGAAGAAATGTTTGCATTGATTGAAGAGAAAGGAGGAAGCCTTAGATCCTTAATATTTCACTTTGAGGTTttgtcagttgaagattacaaaGCAACTATGGAAGCATTTATGAAAATGCTGAGAAAGTGTCCTTTGCTCAAATGCTTAAAAGCAAACATTACACGTCTAACACTCTGTGTAACTGCTAGGCCAAGAAATGATTTTGCTGTACCTGAAGATATTTGGATGGAACATATGGAAAAATTGACACAAATTTTGATCTTAAAGCATGCAAAATTAAATTACCTTAAGTTCCCATTTGCTGTTGCCAAGAAAGATAGTAGCGGTAATTGCTTTTGGAAAGTAGCCGCTGATTTCACCAGAACAAAAATTAGTGCTCCGTCATCAATTGAAAATGGTGAATACAATGGCGTATCTAGCGAAACAGAACTGCCAATCGAAGACTTCAAAGGTAACTGCGTATTTTCATGCGTCTTCGAACGAAAGAATTGGAAGCTTCATACAGAAAGAGTCATCGATAGTTTCTTGACCGCGAAGGGTGCAAATAAGAAAGAGTACAATTTCTAttctttcttatcattttgcTACTCGTGTTGGTTTGGATTCACAGAAAAAGATAGCGGTCGCAGAATAGAAGAGTTGAAACTTGACGAGAAGTATTTGAAAGTCTATTACACTCTGCAAACcgatgaaaagaagaagacattCGGCCAACATATTGGTAGTGACCTTGTTGGTGAAACAGAAAATGATGGACTTGCCACAATTAGGTGGGCAACCAGAGTTAATATGAATAGTGTGAAGCGAGCAGTTGAGGATGGAAAAGCTAATAAACTATCAAAGAATGATATTGTAAGGGAAGCGGAAGAAACAGAAGACAGGTATTACAAGAACGCAGTGCTGTCTTACCTGCTCCAACATCCTGTTGAAAAAGCTAAATAG

Transcript

evm.model.HiC_scaffold_2.672

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007444 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646 all species →	F-box	F-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38926 all species →	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.672.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.