Detailed information of evm.model.HiC_scaffold_2.68 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1149617...1161114
NR annotation: XP_047132177.1, lysosomal-trafficking regulator [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P97412Lysosomal-trafficking regulator OS=Mus musculus OX=10090 GN=Lyst PE=1 SV=1
Q9TTK4Lysosomal-trafficking regulator OS=Bos taurus OX=9913 GN=LYST PE=1 SV=1
Q99698Lysosomal-trafficking regulator OS=Homo sapiens OX=9606 GN=LYST PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002273 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02138
all species →		BeachBeige/BEACH domainFamilyInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR000409
all species →		DomainBEACH domainInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036372
all species →		Homologous_superfamilyBEACH domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR050865
all species →		FamilyBEACH Domain-ContainingInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13743
all species →		BEIGE/BEACH-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.HiC_scaffold_2.68.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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