Gene detail

Detailed information of evm.model.HiC_scaffold_2.79 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1324568...1351058
NR annotation: XP_042524609.1, semaphorin-5B isoform X2 [Dipodomys spectabilis]
Species abbreviation CQUIN · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.79

ATGTACTGTGAGAGGGATTGTCAGAACTATATCCAACTGATCAAACCATACCAAGACAAACTATTCATATGTGGAACGAATTCAATGAGTCCTGTGTATAATATTACAAAGCTTGAAGACCCAAGTTCAGTTGTAATTGGAAATCAAGCCGCTAAAGACAAGTGTTCGCTAACACCAAGTCTACAACCAGTTGCAGCATTTTCAAGGCTGTCTGAATTAGTAACAAGTTCATTTGTGGATAAAAATGGCCGAGGCCCAGTAATCAGTGGATCTTATCTTGACAAGCGAAAATCATTGTGGGACCCAATCAAAACAAAGTCATATAGCCTAGAGACTCTCAGAAgTCCAGAGTTTAAAGAGAGTTTTGCAATCTATCCTAGTGTATATATTTTCTTCAATGAAGCTGCAGTGGAGCGATCCGAGGTAGTAACATACGGATTCTTTTCATGCACGAACACACTCCTAATACACGTGTTATGCACgtcatggcctTTTATGCAGCGCCGTTATCTTTTACTAGGCATTTTCAACAGTGCTTTACAACTATTCACCCCCTTAGCCAAGAccatttttatctttttccatttttttctaTACTCCCTTAGAAGTTTATATCGActcgcTTCAAGTTTCAAGGCATCTGCTATGTGTGTATTCTCTCTTCATGAATTAAAGAAAGCTTTTGAAGGCGATTTCTTGTACCGAAAGGATACGAACTCTCCCTGGTCACAAGTTGCGAATCCAAGACATTTTACTGAGTGCACTGTAAATCCTACCAGTCTGAATAAATACTCGATGAAAACGTACAATGAAACTGTACAGCCTGGAAAGCAGCCAACGAATTTCATGACAGGAAAAGCATTAACGGACTCGTATCGATACCGGTTGATGTATAACAGCCTCATAGCCGTACCAAGATTTTCATTTCACCGTAAATTGGAAAGATTCACCGCTGTTGCTGTTGATGTGGTCAAGAGTAGCACAAAGCAAAGCCATACATTGGTTTATGTTGCGACAGGGCAAGGAACGGTAATAGTACTTCATCTAAATCATGCTCGAAAGCTGACATGCGTACTGGATGAGATTCACTTATTTGAGGTAGCGTTATcaactgaaaatataaaaaacctGGAATTGTGGAAAGAGGAGCAAAAGTTGTTTGTTGGCACGAATGAAAGAGTCGTTCAACTCTCGCTGGATGTCTGTTCTCGCTACAAAAACGCAAGTTCGTGCGTTGAAGCTCGTGATCCTCGCTGTGGTTGGTTTAAAATCACAGAAAAGTGCATGTATATAGATAATAACAGAACAACCGACACAACGAATAATTTTCTGCAAGATCTTTCAAAGTGCCCAGTTAAAAAAGGCTATTGGTCTGCATGGTCAAGCTGGCATGTGTGCAAAGACAACAATAGCAACAGATATTGCCGATGCAGAAAAAGACGATGCCGCACATGCAATGAGAAAGATTGTATTGGCAATGGTATTCAGATCTATAATTGCTCGGCGACCAATATCGATGACAAGCAGTCATGGTTATCTAAAGGTGTAGTCGACGGTGGATGGTCGTTGTGGTCACATTGGTCCGTCTGCGATCACGACTCTTGTGGATCAGGTTTTCAAACAAGACAACGATCTTGCAATAACCCGATGCCAAATAACGGTGGACTACCTTGCACTGGAAATAGCCGTGAATGCAGAAAATGTAATGCAAAACCAAGTGCAGCTTCTTGCATACATAAAATTGTAAAGGGAATCTGGAGTAACTGCATCTGCTTTTTGGAGGAAGGAAAATCAGTTTCTGTTGGTGTTCAATTTCGTGTTAAAACATGCTACAGCAGTTGTGGCAATAAGAAAGGTTGCCCTACAGATCAAATACAAAATAGAACATGCTTTTGTAAGAATGAACCAAAAGCAAGCCGAACACCAGGCATTGTATTCACATCATTACCACACACGGCATCAAGTAGCAGCCGAACTGCCGCCCCAGGTTTTCGACTTACTGATATTATAATTGCTGTTGTTGGCACTTCGCTATTctgcttgattgtttgtttaGTAGCAATATTCTGCTTCGTTAAGCGGAAGAAGAGAAAAGGTATGTCTAACAGAAGAAGCTTAGACGACGATGATCTGACTAAGTTGCCTTTGAGGTCCATCGACTTGAAACAAGGGAACGGCTCCCTTGAGGACCAGAAACGGCCGCCGAGTAGTGACAGTGAAATATCGTTTGAAAATAATAAACACATGGTTCCGATAAATTTAGATacttctgttgttgttggtatggctttcaaaacaacaaataaatctCCTAGAAATggtaaattaaaaatgttcgGTGAAGACAAAGACTATGAAATGGGAATAACTTCCTTCTAG

Transcript

evm.model.HiC_scaffold_2.79

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VTT0	Semaphorin 5c OS=Drosophila melanogaster OX=7227 GN=Sema5c PE=1 SV=3
Q9W686	Semaphorin-3ab OS=Danio rerio OX=7955 GN=sema3ab PE=2 SV=1
Q62179	Semaphorin-4B OS=Mus musculus OX=10090 GN=Sema4b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06841	SEMA5; semaphorin 5	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.