Gene detail

Detailed information of evm.model.HiC_scaffold_2.93 in Chrysaora quinquecirrha

Genomic Location: HiC_scaffold_2:1556539...1574795
NR annotation: XP_047126812.1, sodium- and chloride-dependent GABA transporter 1 isoform X1 [Hydra vulgaris]
Species Chrysaora quinquecirrha · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.HiC_scaffold_2.93

ATGGCATGGTCTTCCTCAAGACCATCAAACACCTTCCTTTCAGATGGTGCAGTGATTCATTTACAAGAAACAGAGAGACATGAAGAACTCCTAAAAGATACAGACGATGATCAATTAGAAGAACAACTTAGCAAAGCATTAGAGGAAGCAGAAAGCAGAGAAGCATGGGGAAGCAAAACAGAATTTCTCCTCGCTTCAATTGGACTTGCTGTTGGTGTGGGTAATGTTTGGAGATTTCCATATTTGGCACAGAAACATGGAGGAGGTGCATTTCTCATTCCTTATTTTACGATGATGTTGATAGAAGGCATTCCGTTGTTCATCATGGAATACGCCCTTGGTCAACGCATGAAACAAAGTGCTGTCAAAGTATGGAATAATGTCCACCCAGTTTTCTTTGGTGTTGGATTGGGATGCATGCTCGTTTCTTTCGCGATGTGTCTTTATTACATTGTGATCATCACGTGGTGTGTCTATTATTTCTTCGTGTCCTTCACATCAGAACTACCATGGAAGATTGAAAAATGTCCAGGCTACCCGGCATATTCAGTTATAAAGAATAACTTCACATACTGGGACACAATGGCCAATCAAACATCATACACAAAAAATATATCCAAAATGATCAAGAACCAAATGAACAGTTTTCCGGATTGCTGTGTTCACAATCCAACGGAATATTATTGGTATCAAAGAGCATTGGCTGTTTCAACTCAAATTGGCAGCACAGGTGATGGCATGAATTGGAAATTGTTTGGTTGCCTGTTTGTTGGATGGGTTGTTACTTATCTCTGTGTTTTAAAAGGAGTCAAATCGAGTGGCAAGGCTGTTTATTTCACAGCAACATTTCCCTACATCATTATGTTCATCTTGTTTATTCGTGGAGTGACCCTCGAAGGTGCTGGTATTGGAGTTTTGGCATTTTTCAAACCCAACTGGAGTAAAGTTTTGGACCCGAGAGCTTGGATGGACGCAGCGACgcaaatgttttacagtttgaGCATTGGATTCGGTGCATTGATTGCATTCTCAAGTTATATGCCACGTAAAAACAATTGCAGTCGTGATGCAATCACTGTCGTTTTGGCAAATTGTGGTACATCTCTTTTCTCTGGTATCATCGTATTCTGTTTCCTTGGTCATCGACAAGTTACTACTGGTGTGAAAGTCACAGATaTAAGTCCAGGACCTGGTCTTGCTTTCATAACATTCTGCGATGCCTTCCTATTAATGGATGTTTCTCCATTGTGGGCAGTTTTGTTCTTCCTAATGTTGATATTACTTGGTATCGATTCAGAATTCGGCACGCTTGAAGGAGCAGTTGCACCTTTGTATGATCTCAAATGGGTGACAATGAGAAAAGAGTATTTGATGGGACTTCTTGCACTTGGCATGTTTGTAATTGAACTTGCACTCGTCTGTGGCAATGGATTCTACTTATTTCAAGTATTTGATGATTATTCAGTGCCATTACCTCTACTCATCATCTCATTGTTCCAAGTTGTTGCTATTGGATGGTTTTATGGTACTGACAGATTGTCGAATGATATTGAATATATGACTGGAAAAAGACCCTTTTTCTTCTGGATATTGTGCTGGAAATATATCTCACCATTGGTCATGACATTTGTTTTCATCACAAGTGTAATCAAAACTGCAAGCGAATCACCAACCTACTTGGCATACGTTGGCTGTAAACAAGCTCCTTATAGTTCATTATTTCCTGGAACGAAGAATTCAACGCTGAGACTTCCTTACCCCTGGTGGGCACAAGTTTTGGCTGTGCTCCTTGTTTTAGCCTCTGTATTTCCACTACCAATCTACTTCATTAAAAACTGGCCGAAAAATTGGCGTCAAGGTTTCCGTAGCACTTTTCTGTCCGGCATTGCAAACTATGTTCCTGATCCGTCTTGGTATGACAAAAGTAGACGAATTCCACCAGAAGAAATGGAGAAAATTATAAGGCAAGAAGACATTGCGATTATGAAGAAAGAAATGGaagatgaaaaatcaaaacagaatTATGCAGTAGAAAGGGTCGAAGTTGagaaaaaaccctgtttttCGATTTTACGATTTGAGATGGCAGAAAATAAATACGATCTGCTTCTTATTCCCACAAAAGATAACAGCAGAGTCAAGCACCAACCCTGGTATCGAGAACGCCTTCAAAACAAGTATTCCAAGCCTGCTGTTAACAAAAAAGATTGGAAACCAAAATTAAACTCCACATCATGGACATTTATCAAAGATGGTTTAGATGATTTTAGAGATGGAAAACCACCAAATACAGATTCTGAAATTGTCCTCAAGGGATCTAAAGGACTGGAGCCAAATCTCTTTGGTATTGATGCTGACTGCAAAAGACAGCCaaagcaaaaaattatcaaaaagttTCCCAAAGATGAAATTGTTTATGAAAAGCAGTTACCTTTACAAAGGCGAAGAAGGCAAAGAGTAGAAGATATGGAAAATAGTCTGTTAAATCATCCACTTGCTCTTTTTCCTCATTTAGAAGAATCTGTTCCACCAGAGCTATTTGAAGATATTGTAAATTTGCTTGATCCAGCAATGAACTTAGAAGAAGAACAATCTGACACACCTGAGAGTTCAACATCAGGAAGGCAAGGCCAGAAATCCATGGTATCAGATGATGTTTTCCaagagAGTGGTAGAATTTCATCTCGAGAACTCTGTACTGGTTATAGGGACGTGATGGAATCATTTAGGAAGAATCATTATAAATGGCTGCCAGAGCAGATTGAAGTAAATAAAGAAGAAAGGATAAAAGCATTAAAAAAGAGACAAGAATCGCCCACTCAGGAAACTGGTATTGATGAAGTTACTAAAGAGTTTTGTGATTGGGTTAGAAGTTTGGGTGAAGGTTCAAACAACATCGAAGAATCTACTATATATAGTTTGTTTGCTAGTGGATATGAAACCAAGCCTGCACTTTCAGTGCCTATTCATGTAGTTGAACTGACAAATGTCCCTCCTGAGCTGAGAAATGCTGGAGTTGGACCCAAAAAAGATAGCATCAAACAAACTAAAGACACAAGAAAAGAGCATGAATCAAAATATACACCAAGTTGGGTGAAAAAGTATCACACTGCGTGGTATCTTGATCCTAAGAAATGGACTTCTCGATTTCCCAATGAAAAATTACAAGATCcaaaggaaaataaagaaaaacaaatgtcGGAATCGAAACAGAAAAGTAAAGATTTGGATAAAGTTCTAGCAACATTACATGGAGCAAGAGCATTCAAGGATTTCGTCGATACCAAAAAAACAAGACGACCTGAGTTCCTGGAATCAGTGGCTCAGCATCAACAAATGATAGAAGCCGAAGCAGCCAAAAAATCAGCCgaagaaatgaaatcaaatgaaaaaccACAAACAGCTGAATCAAGATCAAGAGCTACTTCACGTAGAGCGACGCTAAGTCCTAAACTACGAATAGGTACTATTGACTAA

Transcript

evm.model.HiC_scaffold_2.93

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R6J1	Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Pongo abelii OX=9601 GN=SLC6A19 PE=2 SV=1
Q2A865	Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Rattus norvegicus OX=10116 GN=Slc6a19 PE=1 SV=2
Q695T7	Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens OX=9606 GN=SLC6A19 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000304 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14642 all species →	FAM47	FAM47 family	Family	Interproscan
PF00209 all species →	SNF	Sodium:neurotransmitter symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000175 all species →	Family	Sodium:neurotransmitter symporter	Interproscan
IPR032743 all species →	Family	FAM47 family	Interproscan
IPR037272 all species →	Homologous_superfamily	Sodium:neurotransmitter symporter superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11616 all species →	SODIUM/CHLORIDE DEPENDENT TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.HiC_scaffold_2.93.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.